Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2949 ATGGAGTGGGACAGCAACTCGGATCTGAGCGGGGAGGAGGAAGAGGAGGGAGCGTTCGACTTCACCCACGCCGACGCCGATGATTGCCCTCTCCCGTTTCCCGTCGAGAACCTTCTTCTGCAGACGGCGCCATGCGGAGTCGTCGTCACCGACGCACTCGAGCCTGACCACCCTATTATCTACGTCAACACCGTCTTTGAGATCGTCACCGGTTACCGCGCCGAGGAGGTTCTCGGTCGCAATTGCCGCTTCTTGCAATGTCGAGGTCCATTTGCCAAGAGAAGGCATCCATTGGTGGAATCAACAGTAATTTCAGAAATTAGAAGATGCCTTGAGGAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACGCCTATATATGGAGATGATGAGACTATAACACATGTAATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTAGGTCCTCTTCACGGTTCTTCACTTAAAGAATCTACTAAGTCATCTGATCGATTTCATTCTGTGCCTTCCTCTTTTCATCCTCTTCCACCAGGAGAGCGAAATGTATCGCGTGGAGTGTGTGGGATATTCCAGTTGAGTGATGAGGTACTGTCTCTGAAGATACTTGCTTGTTTAACTCCAAGAGATATTGCATCAGTTAGCTCTGTCTGTAGGAGATTGTATGAGCTGACAAAAAATGAAGAYCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTKTTAGAGACTGTGCCTGGTGCGARGAGGCTTGGATGGGGTCGGTTGGCAAGGGAATTGACCACCCTTGAAGCAGCAGCATGGAGGAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGTGCTTGTGCTGTGGGCAATAGAGTAGTCCTGTTTGGTGGTGAAGGAGTTAACATGCARCCTATGAATGACACCTTTGTATTGGATCTCAATTCTAATAATCCCGAGTGGCAACACGTCCAGGTAAGCTCTCCTCCTCCTGGTCGATGGGGCCACACCATTTCTTGTGTCAATGGTTCTAATTTGGTTGTATTTGGAGGATGTGGAAGGCAGGGCCTGCTCAACGATGTGTTTGTTCTGGACCTGGACGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCGCCCCTTCCAAGGTCGTGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATTGTTTCTGGAGGCTGTGCAGACTCTGGAGTGTTATTGAGTGATACTTTCCTCCTTGATTTGTCCATGGAGAAGCCTGTCTGGAGAGAGATACCARTGGCATGGACTCCACCTTCTCGAYTGGGCCACACATTGTCTGTTTATGGTGGTAGGAAAATACTAATGTTTGGRGGTCTGGCTAAGAGCGGACCCTTACGTTTTCGTTCCAGTGATGTATTCACTATGGATCTAAGTGAGGAGGAGCCTTGTTGGAGATGTGTAACAGGGAGTGGAATGCCYGGTGCYGGAAATCCCGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGTCTTCATTCTGCCTCYCAGCTTTATATTCTTGACCCAACCGATGAGAAGCCCACATGGAGGATTCTAAACGTACCTGGTCGCCCTCCGAGATTTGCTTGGGGACACAGTACATGYGTTGTTGGAGGGACAAGAGCTATTGTATTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCGCTTGCGAGTTCTGTCCTATAG 1854 0.4898 MEWDSNSDLSGEEEEEGAFDFTHADADDCPLPFPVENLLLQTAPCGVVVTDALEPDHPIIYVNTVFEIVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVESTVISEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPLHGSSLKESTKSSDRFHSVPSSFHPLPPGERNVSRGVCGIFQLSDEVLSLKILACLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGAXRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPXAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVL* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2949 617 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 616 - -
Amo01g2949 617 Pfam F-box-like 213 251 IPR001810 GO:0005515
Amo01g2949 617 SUPERFAMILY Kelch motif 287 505 IPR015915 GO:0005515
Amo01g2949 617 Gene3D - 202 249 - -
Amo01g2949 617 PANTHER ADAGIO PROTEIN 1-LIKE 1 616 - -
Amo01g2949 617 CDD PAS 43 153 IPR000014 -
Amo01g2949 617 Gene3D - 504 616 IPR015915 GO:0005515
Amo01g2949 617 Gene3D - 278 503 IPR015915 GO:0005515
Amo01g2949 617 Gene3D PAS domain 29 165 - -
Amo01g2949 617 MobiDBLite consensus disorder prediction 1 23 - -
Amo01g2949 617 Pfam Galactose oxidase, central domain 301 351 - -
Amo01g2949 617 Pfam PAS domain 45 154 IPR000014 -
Amo01g2949 617 SUPERFAMILY F-box domain 194 266 IPR036047 GO:0005515
Amo01g2949 617 MobiDBLite consensus disorder prediction 1 21 - -
Amo01g2949 617 Pfam Kelch motif 458 509 IPR011498 GO:0005515
Amo01g2949 617 Pfam Kelch motif 525 572 IPR011498 GO:0005515
Amo01g2949 617 SUPERFAMILY Kelch motif 455 610 IPR015915 GO:0005515
Amo01g2949 617 SUPERFAMILY PYP-like sensor domain (PAS domain) 43 154 IPR035965 -
Amo01g2949 617 TIGRFAM sensory_box: PAS domain S-box protein 40 153 IPR000014 -
Amo01g2949 617 Pfam Galactose oxidase, central domain 365 412 - -
Amo01g2949 617 ProSiteProfiles PAS repeat profile. 39 114 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2949 Amo-Chr1 100806519 100811091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2949 40 155 AGC Kinase Gene Family AT5G58140 31.034 8.87e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2949 K12115 - gmx:100301888 1133.63