Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2943 ATGAAGAACATGACAAGACAAGAGTTTGTTGCTTCTCTAAGAAGGAAGAGCAGTGGATTCTCTAGGGGGGCGTCTATATACAGAGGAGTGACTAGGCACCACCAGCATGGGCGATGGCAGGCAAGAATAGGCAGAGTAGCCGGAAACAAAGACCTGTACCTTGGCACTTTCAGTACCCAAGAAGAAGCTGCAGAGGCTTATGACATTGCAGCAATAAAATTCAGAGGACTCAACGCAGTGACCAACTTCGACATGAGTCGCTACGACGTCAAGAGCATTGCTAACAGCACCCTTCCCATCGGCGGACTATCAAACAAGAACAAGAACTCCGCCGATGACCCCGTCGTCACTCAACCACCACCACCACCACCTTCAAGCTCCACCCTCAGCTTCGCCATTCCCATCAAACAAGACCCTTCCGCAGATTACTGGTCCATCATTGGCTACTCCAATAACACACAGCTGGAAAGTGCCAGGGGTACAAATGTAATTGCAACAGCAGCAACCTCTTTTCTACCTCCCAACAACAATGGCAATGGCATGATGGAGTTCTCCGCTGCCCCTTCAGCGGACGGATTCTTGAACGGAGGAGGGATCTTTGTTAGCCACAATCATCATCAAGAAGAGAGTGGTGGTTGTTCCTCACCATCTTCGGGTGGTTCTTCAATCCCATTGGCAACGCCAATATTTTCCTTAAATAGCAACAATAATTATGAGAACTGGATTGGTCCAACACTGCACACATTCCAAGCTCATGCAAAACCCAGTCTCTTTCAAACGCCAATATTTGGAATGGAATGA 801 0.4819 MKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSNKNKNSADDPVVTQPPPPPPSSSTLSFAIPIKQDPSADYWSIIGYSNNTQLESARGTNVIATAATSFLPPNNNGNGMMEFSAAPSADGFLNGGGIFVSHNHHQEESGGCSSPSSGGSSIPLATPIFSLNSNNNYENWIGPTLHTFQAHAKPSLFQTPIFGME* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2943 266 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 266 - -
Amo01g2943 266 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Amo01g2943 266 CDD AP2 25 86 IPR001471 GO:0003700|GO:0006355
Amo01g2943 266 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Amo01g2943 266 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Amo01g2943 266 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Amo01g2943 266 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Amo01g2943 266 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Amo01g2943 266 SUPERFAMILY DNA-binding domain 25 86 IPR016177 GO:0003677
Amo01g2943 266 MobiDBLite consensus disorder prediction 99 114 - -
Amo01g2943 266 MobiDBLite consensus disorder prediction 99 131 - -
Amo01g2943 266 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL5 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2943 Amo-Chr1 100748937 100750741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2943 14 89 AP2-EREBP Transcription Factor Family AT5G57390 38.095 1.70e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo01g2943 AP2 1.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2943 K09285 - gmx:100803558 358.607