Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2932 ATGGATACTGGAGAGGAGTACTCACTTGTTATTGAACTATCTGAAAACGATCTTTTCTTTGAACAAAAGAAGAAATTACTAGAAAATAAGGGTTTTCGACCCAAGGAACGAATATACCTCAAGGYTACCTCAAAGCRTGGTTGGGTGAATGCTACCGTAAAGGTTTTACTGCAGATTGCGCGAATTATACAGTTAAATGAGCTGGAACTTTATTTTGCCGAAGATGATGGATGTCCTTTAGTGGAGTTTTACAGCCCCAGGAATGAGTTAGAGGCTTTCGATTCAATTCTTTCACTTGTTGACATATCACTTTCTTCTTGTYCAAATCTCCATACAAATATCCTGGAATTGTTACGACAAACAATTCTTGATTTGATTTCTGATTTTGGGGATAAGAATAGTGTGAAGGGAATAGTTGAAAGAGACCATGGTATTGACCAGGAAGAACGCCTGATAAAATGGGCAGAAAGCAATGGTGTAAGGACACAGCTAAAAATTGCTTATGTCCAAGGTGCAGGACGTGGTGCAATAGCGAGGGAGGATCTCAAAGTTGGAGACATTGCTTTAGAAATTCCTAGTTCCATTATCATTTCCGAGGAGCTTGTTTGTGAAACTGATATGTATCATGTCTTAAAAGAGGTTGATGGCATATCTTCAGAAACAATATTGCTGCTGTGGAGTATGAAAGAGAAGTACAACGTCAATTCAAAATTCAAAACATACTTTGACACACTCCCGGAAAACTTCAATACAGGATTGAGTTTTGGCATTGAAGCAATTACAATGTTAGATGGAACCTTGCTGTTGGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAGTATGACGAGTTGTTCCCTGCTTTGTGTAACAACTTCCCTGAGATATTTCCAGTAGAGCTGTATACATGGGAGAAATTTTTATGGGCTTGTGAACTTTTTTACTCCAATAGCATGAAGATAATGTTCCCTGATGGAAAGCTGACGACATGCTTGATCCCTATAGCTGGCTTTCTTAATCATTCACTGTGCCCACATATTTTGCACTATGGCAAAGTAGATGCTACTACAAATTCATTGAAATTTCGMCTATCAAGACCATGCAAATCTGGAGAAGAATGCTGCTTAAGCTATGGGAACTTCTCCAGTTCTCATCTAATTACCTTCTATGGTTTCTTACCGCGAGGAGACAACCCATATGATACCATTCCATTAGATATTGATGGTTCTGATGTTGATTATGTTGAGGATAAATGCCCGCCCAACTGGACGACTCACATGGTGCGTGGTACTTGGCTCTCCAACAATCACAGCCTATTCTATTATGGCCTTCCCTCTCCATTATTGGACCATCTTCGGAGATCTCGAAGTCCCATGCTGAATACGAAGACCTTGTTGCAAGAAAACTTGGAAAATGAGCTGCAAATTCTTGAAGATCTAATATATATATTTGATGACATGATTGACAACATGGGTGAGACCGATTTTGATGACAGAGAAAACTGCAGCTGGGATGGAAAATTGGCAATGGATTTTAAGAATCTACAAAGACGAATTGCGTGTTCTGTTTCAAGCTCATGTCATAATGGTGTCAACATGTTGACGAATGAATTAAACAAGTGCATGGCTGAGGACACACGAGGCTAA 1650 0.3958 MDTGEEYSLVIELSENDLFFEQKKKLLENKGFRPKERIYLKXTSKXGWVNATVKVLLQIARIIQLNELELYFAEDDGCPLVEFYSPRNELEAFDSILSLVDISLSSCXNLHTNILELLRQTILDLISDFGDKNSVKGIVERDHGIDQEERLIKWAESNGVRTQLKIAYVQGAGRGAIAREDLKVGDIALEIPSSIIISEELVCETDMYHVLKEVDGISSETILLLWSMKEKYNVNSKFKTYFDTLPENFNTGLSFGIEAITMLDGTLLLEEIMQARQHLHAQYDELFPALCNNFPEIFPVELYTWEKFLWACELFYSNSMKIMFPDGKLTTCLIPIAGFLNHSLCPHILHYGKVDATTNSLKFRLSRPCKSGEECCLSYGNFSSSHLITFYGFLPRGDNPYDTIPLDIDGSDVDYVEDKCPPNWTTHMVRGTWLSNNHSLFYYGLPSPLLDHLRRSRSPMLNTKTLLQENLENELQILEDLIYIFDDMIDNMGETDFDDRENCSWDGKLAMDFKNLQRRIACSVSSSCHNGVNMLTNELNKCMAEDTRG* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2932 549 SUPERFAMILY SET domain 147 401 IPR046341 -
Amo01g2932 549 Coils Coil 461 481 - -
Amo01g2932 549 CDD SET_LSMT 164 394 - -
Amo01g2932 549 Gene3D set domain protein methyltransferase, domain 1 146 394 - -
Amo01g2932 549 PANTHER BNAA07G01600D PROTEIN 10 545 - -
Amo01g2932 549 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
Amo01g2932 549 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 10 545 - -
Amo01g2932 549 Gene3D - 3 126 IPR036464 -
Amo01g2932 549 Pfam SET domain 173 380 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2932 Amo-Chr1 100619249 100625116 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo01g2932 SET 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2932 K19199 - gmx:100778605 879.396