Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2916 ATGGGAAAGATAAATTACTTTGCCTGCATTATTATTCAATCTTGGTATCTTATGGTCATAATAACAGTTGCTGAGTTTGAAAGTGTTGACTCTTCTGTTCAACCACTACCACTCCTAGGAGGAAAGAAATTGATCATTGGGATACCCTTTAAAACTGGTTTCACTGAATTCGTGGAAGCCAAGCTGGATCCTACAACACTCCAATTGGTCCACGTCAGTGGCTACTCCATTGATATCTTTTCTGCCACGGTTGACTATATCAAACGCTACTCCCATTTCAATGTCTCTTACGATTTTCGACCATTCATCAAAAATGAAACAGGACAAAGTGCTGGCTCTTATGACAAGCTTGTTCAACAGGTTTTTAAACACCAGTATGATGCGGTGGTGGGAGACGTATCAATTGTAGCTGAGAGAACAAGGTATGTGGATTTCACGTTACCATATGCAGAGTCAGGTGTGAGGATGCTGGTGCGAGTTGGATATGGCGGCCGCGGTCTAAACATGTGGATATTTCTGCGGCCATTTAGTTGGGATCTATGGTTGTCCATCATTCTAGTATGTGCTTTTATAGGAGCTGCAATACGATTCATGGAACGTCGTAACATTCATAATAATAATAATAGTCATGAAGAAGAATCTGCACATGGTTCTCCACCTCCCCAACAACTCAAAGGGATATCAATATTATGGCTTCCAATTGATCAACTCTTCCTTCCTCAGAGAGAATCAGTAGGCAAGAATTGCTCCAAGTTTGTATTGGTGGTATGGTTGATATTGGGATTTGTGTTGATGCAAAGCTACACGGCAAACTTGTCATCYATGTTGACCGTGGACCAATTGCAGCAAARCTATCCAAGTGTTGATGATTTGAGAACARRTGGTRRCAACATAGGGTACCCAACGGATTCCTATCTATCTGAGGTKCTGGTTGACAAATTCAAGTTCGATAGATCAAGGCTAAAGAATCTGACAAAAATGGAAGATTATCAGAAAGCTTTAGACAAAGGAACTCCAAAAGGCGGCGTTGATGTTATATTTGAGGAGATACCATACATCAAGATGTTCCTCAAAAAATATGGTTCCAAGTATAACATGGTTGGGCCTCACTATCGTACTGATGGGCTTGGCTTTGCGTTTCCAATTAACTCCAACTTAACATCTTACTTTTCAAGAGCTATATTGAACGTTACCCAGAATGACAGTTTTATGCAACCGATTGAGATGAAGTATTTTGGAAGCAGTAACTATGATTTCGAAGATGATTCTTACCAGTTATCAACGTCAACATCATCAGATAGTACTCCTAGCCTTAACTCACAGAGTTTTGCGGGCTTGTTCATCATCACAGGAATTGCCACATTTTTAGCTTTGGTGGTTTCTGAAAGCAACATCTGGAGAAAACCCGTAACACTAGCCAAAGTCTACAGTCAAAAGTTTCTTCTAATGTCTCCTAGTTGGGCAAAATCTAARCAATCTATGGATGTTTCTACAAAGCAAGGGAATAAAATATGTTCTATCAGTGAACCAAATAGCATTCCTGAAAGTCCATCAAGGTTTCCAAAGTCTAATCTTGCTCTAGACACAGTTGTATAG 1596 0.3972 MGKINYFACIIIQSWYLMVIITVAEFESVDSSVQPLPLLGGKKLIIGIPFKTGFTEFVEAKLDPTTLQLVHVSGYSIDIFSATVDYIKRYSHFNVSYDFRPFIKNETGQSAGSYDKLVQQVFKHQYDAVVGDVSIVAERTRYVDFTLPYAESGVRMLVRVGYGGRGLNMWIFLRPFSWDLWLSIILVCAFIGAAIRFMERRNIHNNNNSHEEESAHGSPPPQQLKGISILWLPIDQLFLPQRESVGKNCSKFVLVVWLILGFVLMQSYTANLSSMLTVDQLQQXYPSVDDLRTXGXNIGYPTDSYLSEVLVDKFKFDRSRLKNLTKMEDYQKALDKGTPKGGVDVIFEEIPYIKMFLKKYGSKYNMVGPHYRTDGLGFAFPINSNLTSYFSRAILNVTQNDSFMQPIEMKYFGSSNYDFEDDSYQLSTSTSSDSTPSLNSQSFAGLFIITGIATFLALVVSESNIWRKPVTLAKVYSQKFLLMSPSWAKSKQSMDVSTKQGNKICSISEPNSIPESPSRFPKSNLALDTVV* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2916 531 Pfam Ligand-gated ion channel 414 453 IPR001320 GO:0015276|GO:0016020
Amo01g2916 531 Gene3D - 38 161 - -
Amo01g2916 531 SMART GluR_14 43 414 IPR001320 GO:0015276|GO:0016020
Amo01g2916 531 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 487 - -
Amo01g2916 531 Gene3D - 167 315 - -
Amo01g2916 531 SUPERFAMILY Periplasmic binding protein-like II 40 414 - -
Amo01g2916 531 Pfam Bacterial extracellular solute-binding proteins, family 3 113 413 IPR001638 -
Amo01g2916 531 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 12 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2916 Amo-Chr1 100406880 100409284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2916 41 460 Ion Channels AT5G11210 35.952 1.48e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2916 K05387 - aip:107641909 1010.36