Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2913 ATGGGCCTTAAGGGGTTGAGGAGCGGCTGGACCGTGCCGCCCAAGCCATGTGACTCCTGCAAGATCGCTTCCGCGGCACTCTTCTGCCGCCCTGATTCCGCCTTCCTCTGCATAGCCTGCGATTCCAAGATTCACTGCGCCAACAAGCTTGCTTCGCGCCACGACCGAGTCTGGATGTGTGAGGTCTGCGAGCAGGCACCTGCTGCGGTCACCTGCAAAGCTGACGCAGCAGCCCTCTGCGTTACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGCATTCCCGTCGAGCCCTTCTTTGACTCTGCCGACTCTATCGTCAAGGCCTCTGCCGCCTCCTTCAGCTTCGTCGTCCCAACCGACAACGGCATCTCCTCTGACGGATTCCCCAACGACGACGCCGCCTGGCTCATTCCCAACCCAAACTACGGCTCAAAGCTTATGGACGCCCCGGACATGAAATCAAGGGAGATGTTCTTCTCAGAAATGGATCCCTTCCTCGATTTCGATTATTCCAACTCCTTCCAGAACAACAACAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAATCCAAACCCGCTCCCATGATGAATCACCATGCCGAAGGTAGCTGCTTCGACATCGATTTTTGTAGATCGAAGCTTTCCTCCTTCAACTATCCATCACAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTCTCGGATATATCGTACTCGTTCGGCCGGAACTGCTCCGATTCGAGTGGGATGGGATCGGCGGGAAGTGGCGGCGGAGCCACGCAGCTGTGCGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACCATAAGATACGCTTCGCGTAAGGCTTATGCAGAAACCCGGCCCAGGATCAAGGGCCGGTTCGCTAAACGGACCGAAATCGAGTCGGAGGTGGATCGTCTCTACAGCCCCGGCGGTGGTGTCCCAGGGTGTCTCATGCTGGACAGCCAATACGGCGTCGTACCATCGTTTTAG 1092 0.5723 MGLKGLRSGWTVPPKPCDSCKIASAALFCRPDSAFLCIACDSKIHCANKLASRHDRVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERIPVEPFFDSADSIVKASAASFSFVVPTDNGISSDGFPNDDAAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNNNNSAGNDSVVPVQSKPAPMMNHHAEGSCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVPGCLMLDSQYGVVPSF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2913 363 CDD Bbox1_BBX-like 16 59 - -
Amo01g2913 363 Pfam CCT motif 288 330 IPR010402 GO:0005515
Amo01g2913 363 SMART bboxneu5 60 102 IPR000315 GO:0008270
Amo01g2913 363 SMART bboxneu5 12 59 IPR000315 GO:0008270
Amo01g2913 363 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
Amo01g2913 363 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Amo01g2913 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 363 IPR045281 GO:0009909
Amo01g2913 363 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Amo01g2913 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 363 - -
Amo01g2913 363 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Amo01g2913 363 CDD Bbox1_BBX-like 60 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2913 Amo-Chr1 100323280 100326022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2913 3 363 C2C2-CO-like Transcription Factor Family AT5G57660 54.400 7.56e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo01g2913 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2913 - - gmx:100805693 553.132