Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2890 ATGTTCTTGGAACTTACAGTAGGTAAAGTGGCTGCTAATCTTGAAAGCCCCAGGTATGTGATGACTCACTGCAGTGCTGATAGATTTATGTTGAGAAGGCATTCCTCAAGCCAAGTTCTTTCTTCTGGAAGTAAGAGACTCTGGTGGAAGATGTTTCTCTGGAGCCATAGGAACATACATAGACCTATTTCAAGCAAATCAACACAGGTGAATCCTGGTGTGGCTGTAACGCACAATCCATACGGATACTCTTCCGACACCCTTGAACCGAAGCACAAGCAGTCACCAGGAAATGTGGAATGCTATAATATAGAATCCTTGAGACTTGAATGTTTTATCAAATGCAAGGGTGTTCTAAGAGGCGGCGCAGAAGTGGCAGTGAAGCGAATATCACAAGAGAATGACGGCGTGAGAGAGTTCCTAGCAGAAATTTCAAGCCTTGGAAGATTGAAGCAGAGAAACTTGGTTGCTCTGAGAGGATGGTGCAAGAAAGACATGAAAAATTTCTTAATCATCAAAGGTGTGGCCTTTGCTGTGTTGTATTTGCATGAAGGTTGGGAAGAACAAGTTCTGCATAGGGACATCAAAGCCAGCAATGTGTTACTTGATAAGGATATGAATGGAAAGCTTGGAGACTTTGGATTAGCAAGAATGAATAGCCATGGCCAAGTTGCTAGCACAACAAAGTTGGTTGGAACAGTTGGTTACATGGCTCCAGAAGTGATCAAGACCGGACAAGCCTCGACTCGCACGGATGTGTACATGTTTGGAATCTTGATTTTAGAGGTCATGTGTGGAAGGAGGCCTATGGAAGAAGGTAAGCCACCTCTTGTGGAGTTTGTGTGGGGACTAATGGTTAAAGGGGAACTAATGAATGCACTTGATGAGAGGTTAAGTGCTAAAGGAGACTTCAATCTGCAACAAGTTGAGAAGGTTCTTCAGTTGGGATTGTTGTGTGCATACCCTGAACCAAAATCAAGACCAAACATGAGACAAGTTGTGAGTATTTTAGAAGGGAACAATGAGGGAGGAGAAGAATCAGAGAATGAGAATGTGGATACTTGTTTGCTTCTAAAGTTGAAATCTGGGGATATTTTTTCTGAGTATTCTAATTATTTTAGCTATTCAACACACCCAACATTTGAAGATATTCGCCAGTCTAATACTTCTTCAATGTCTCTTACTTGGTCTAAATCTGTAGTTGAGGGTAGATGA 1215 0.4198 MFLELTVGKVAANLESPRYVMTHCSADRFMLRRHSSSQVLSSGSKRLWWKMFLWSHRNIHRPISSKSTQVNPGVAVTHNPYGYSSDTLEPKHKQSPGNVECYNIESLRLECFIKCKGVLRGGAEVAVKRISQENDGVREFLAEISSLGRLKQRNLVALRGWCKKDMKNFLIIKGVAFAVLYLHEGWEEQVLHRDIKASNVLLDKDMNGKLGDFGLARMNSHGQVASTTKLVGTVGYMAPEVIKTGQASTRTDVYMFGILILEVMCGRRPMEEGKPPLVEFVWGLMVKGELMNALDERLSAKGDFNLQQVEKVLQLGLLCAYPEPKSRPNMRQVVSILEGNNEGGEESENENVDTCLLLKLKSGDIFSEYSNYFSYSTHPTFEDIRQSNTSSMSLTWSKSVVEGR* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2890 404 Gene3D Phosphorylase Kinase; domain 1 112 168 - -
Amo01g2890 404 Gene3D Transferase(Phosphotransferase) domain 1 169 340 - -
Amo01g2890 404 SMART serkin_6 107 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2890 404 ProSiteProfiles Protein kinase domain profile. 34 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2890 404 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 171 397 - -
Amo01g2890 404 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 116 172 - -
Amo01g2890 404 PANTHER - 171 397 - -
Amo01g2890 404 PANTHER - 116 172 - -
Amo01g2890 404 Pfam Protein kinase domain 171 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2890 404 SUPERFAMILY Protein kinase-like (PK-like) 116 338 IPR011009 -
Amo01g2890 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2890 Amo-Chr1 99925135 99927048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2890 116 285 Receptor kinase-like Gene Family AT4G04960 60.294 2.07e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo01g2890 Pkinase 1.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2890 - - ahf:112762724 760.755