Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2889 ATGTCATCATCGTGTCTAAGTGGAGCTGGCGGAAGAACCTATGGCTTCGAATTCGAATTCGTTAAGTCAACATCTTCATCAATCACCAGAACTTCACACACTTCATCATCACCRTCTTCAACAATCTCCGAATCCAGCAACAGCCAGCTGGCAATCTCCACGCGTAAGCCCAGAACCGCTCGCAARCGACCCAATCAAACCTAYAACGAAGCCGCGGCGCTTCTCTCCACCGCATACCCCAACCTCTTCTCATCCAACACCCTCAAAAGCTTCGCCAAACCATCGCCGCAATACAGTAACGGTAATATTTCCAATACGGCGTCGTTTTTGGACGATTCGTCGGACCTGTTGTTGCCGTTCAGGGTGTTCGATACGTCGTCGTTTCTGCTCCACCAGTACAAGCCGTCGTGCTTCGCGGTGGAGCCTAAGGTGGTGAGTGTGCAGCACGAGAAGCCATGCCAGAGCCCAGGGGAGATAAGCTCCAGGGTGAATTCCTTGGAATTRGAGGACCATAAYAATAACCATTGCKGCGCCGGAGAAGACGATTTCGATGCCGAATCGATGCTCGACGAGGAAATCGAGGAGGGAATTGATAGCATCATGGGGAGCGGGGTAGAATTGGAATCGTCCTCCATTGAYGGAGCTTCTTCGGATAATAATCCGTGGAGTTGTTTTGGCGGGAAACTGGATTTCCGGCTAGGGTTGCGGAGGGCCGGAGTGAGGGCTCTCCGAAGCGCCGACGACGGCAATTGGTGGAATTTCCCGGCGGTTGATATCCTTCAGATATCGCCTAAGGCCGTAAACAAGCCTGCGCCGCAACAATCGGTGGCTGCGGCAGCTGAAAAGGCGAAGAAGAAGAAGAAGAAGGTGGAGAAACCGAGCGTTGAGGTGAAGAACAAGAACGATGAATTGCCGAAGCTGAATAATATTCATGCCGCTGTTCCGAAATTGAATTCCGGATTGATGTTGAAATTGAATTACGACGGTGTCAGGAATAGTTGGTCCGACCGGGGCTCGCCGTTCGGCGACGACGGCTCAGCCTCCGACTTGCCGGGAAATGACGTCACCGCACGATTGTCACAAATCGATTTGTTATGGGAGAATGGGGGAATGAGAGAGGCTAGCGTGCTTCGCTACAAAGAAAAGCGGCGTACACGCCTCTTCTCSAAGAAGATCAGGTACCAAGTCAGGAAGGTCAACGCAGATCGACGGCCCAGAATGCAGGTACGACCCAGCTGA 1239 0.5206 MSSSCLSGAGGRTYGFEFEFVKSTSSSITRTSHTSSSPSSTISESSNSQLAISTRKPRTARKRPNQTYNEAAALLSTAYPNLFSSNTLKSFAKPSPQYSNGNISNTASFLDDSSDLLLPFRVFDTSSFLLHQYKPSCFAVEPKVVSVQHEKPCQSPGEISSRVNSLELEDHNNNHCXAGEDDFDAESMLDEEIEEGIDSIMGSGVELESSSIDGASSDNNPWSCFGGKLDFRLGLRRAGVRALRSADDGNWWNFPAVDILQISPKAVNKPAPQQSVAAAAEKAKKKKKKVEKPSVEVKNKNDELPKLNNIHAAVPKLNSGLMLKLNYDGVRNSWSDRGSPFGDDGSASDLPGNDVTARLSQIDLLWENGGMREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMQVRPS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2889 412 MobiDBLite consensus disorder prediction 29 55 - -
Amo01g2889 412 Pfam CCT motif 372 410 IPR010402 GO:0005515
Amo01g2889 412 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 408 - -
Amo01g2889 412 PANTHER OS02G0148000 PROTEIN 1 408 - -
Amo01g2889 412 ProSiteProfiles CCT domain profile. 372 412 IPR010402 GO:0005515
Amo01g2889 412 MobiDBLite consensus disorder prediction 29 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2889 Amo-Chr1 99908778 99911496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2889 321 410 C2C2-CO-like Transcription Factor Family AT1G25440 43.243 7.71e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo01g2889 CCT 6.6e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2889 - - adu:107496352 730.324