Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2886 ATGGACTCTTCCTCTTCTTTCTCTCTCTCCAACCACTCTTCTTCCTCTCCTCTCTCCCTCTTCCACCCCTCCTTCACCGACGCCGCCGATGTCCGATCAACTAACCTCTCCATATTCACCGGGGTCCCCAAGTTCGAGGACTTCCTCGGTGCCTCCGCTGCAACTGCACCCACCGCCACAGCACCATGTGCACCACCGCCCCCGCCCCCGCCGCCGCCGCAGCTTGCTCGGTTCTCCACCGACAACAACGGCGTCGTATATGACTCTGAACTGAAGACAACGATAACCGCCTGCTTCCCTGGCGGTTTCGGCGGCGGAGCTTCAAATGGCGCTGAACTGAGTCAGAAGCCATCTCCAAAGAAAACTGTGGACACCTTCGGCCAACGCACCTCCATCTACCGCGGAGTCACAAGACATAGATGGACAGGGAGATATGAAGCTCATCTATGGGATAACAGCTGCAGAAGGGAAGGACAAAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGCTATGACAAGGAAGAGAAAGCGGCCAGAGCTTATGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACTACCACCAACTTTCCGGTTTCCAACTATGAGAGGGAGCTAGAGGAAATGAAGAACATGACAAGACAAGAGTTTGTTGCTTCTCTAAGAAGGTATTTAATAATTTATACTAATAATATATTTCACGTTATTTCTATTTACGAGATATAA 726 0.5096 MDSSSSFSLSNHSSSSPLSLFHPSFTDAADVRSTNLSIFTGVPKFEDFLGASAATAPTATAPCAPPPPPPPPPQLARFSTDNNGVVYDSELKTTITACFPGGFGGGASNGAELSQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYERELEEMKNMTRQEFVASLRRYLIIYTNNIFHVISIYEI* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2886 241 MobiDBLite consensus disorder prediction 60 76 - -
Amo01g2886 241 MobiDBLite consensus disorder prediction 57 80 - -
Amo01g2886 241 MobiDBLite consensus disorder prediction 1 20 - -
Amo01g2886 241 PRINTS Ethylene responsive element binding protein signature 180 200 IPR001471 GO:0003700|GO:0006355
Amo01g2886 241 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Amo01g2886 241 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 109 223 - -
Amo01g2886 241 SUPERFAMILY DNA-binding domain 131 200 IPR016177 GO:0003677
Amo01g2886 241 ProSiteProfiles AP2/ERF domain profile. 132 198 IPR001471 GO:0003700|GO:0006355
Amo01g2886 241 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 109 223 - -
Amo01g2886 241 Gene3D AP2/ERF domain 132 200 IPR036955 GO:0003700|GO:0006355
Amo01g2886 241 CDD AP2 131 200 IPR001471 GO:0003700|GO:0006355
Amo01g2886 241 Pfam AP2 domain 132 190 IPR001471 GO:0003700|GO:0006355
Amo01g2886 241 SMART rav1_2 132 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2886 Amo-Chr1 99871850 99873496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2886 68 223 AP2-EREBP Transcription Factor Family AT5G57390 70.238 4.52e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo01g2886 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2886 K09285 - gmx:100797828 302.367