Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2884 ATGGCTGCTGATTCGTCTATTGAGGGCCTGGTGCTTGATCCTTCTAAATGCAGTAAGTTGACAATGGAGGAAAAAAGAGAACTTGTATATGAATTGTCCAAGTGGTCTCATGGTGCATCTGAGATGCTACAGTCATGGAGCCGTCAAGAAATTTTGCAAATCTTGTGTGCGGAGATGGGGAAAGAAAGGAAGTATACTGGGTTGACAAAGTTGAAAATTATAGAGAACCTTCTAAAAATTGTTTCTGAAAAGAAATCTGCGGGGCATGAAACTGCCACAGACTCTGAACCACAGCAATCTTCTCCTGCAAATGGTCAGAAACCTGCCAAAAGGCAGAGAAAAACTGAGAATCCATCTCGATTGCTGGTGCCTGCAAGCAATGTTCCAGTTAATAATGGTGGTGATGTGGGTAGTGTCACATGCTGCAAAAACTCAGCTTGCAAAGCTGCGCTGAATCTAGCAGATAAATTTTGCAAACGGTGTTCGTGCTGCATTTGTCATCAATATGATGACAACAAGGATCCTAGCCTATGGTTAATATGCAGCTCTGAATCACCTTTTCCTGCCGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAGCACGTTGCTTCTGGAATTGGAAAAGATAGTGAACGTCCCAAGCTTGATGGAAGCTTCTATTGTGTCTCTTGTGGGAAAATAAATGATTTACTCGGGTGCATGAGAAAACAACTGACAGTGGCAAAGGATACCAGACGTGTGGACATACTTTGTTACCGTGTCTCCTTATGCCAAAGACTTCTTCAAGGGACTGAAATGTATCAAAAGATTTATGAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGACGTGGGTCCATTGACCAGCTCACCAGCAAAGATTGGTAGGGGGATTGTGAATAGGCTTTCATCTGGACCAGGGGTTCAGAAACTCTGTGGATCTGCTCTGGAATCTCTTGATTCACTGCTTTCAAAAAGGATCTCGCCTATATCACCTAATCTAACTAATCAAGTTGATCAATCAACACCTATCGATGCAAAAATGCTTGCTCCAAGCATGGTGAGGTTTGAAGACATCACTGCAACATCCCTTGCTATTATTTTGGGATATGAAAATCATGGAGAAAATATTTCTGGTTTCACCTTGTGGCATCGCAAAGCTGATGATGAGGACTACGCAGTGGACCCTACTTGCACTTTGCTTCTTCCAAATAGAAGGTTCAGTGTCAGAGATCTTATTCCTGCTACAGAATACACTTTCAAAGTTGTTTCTAATGACTCGAGGGAGTCGGGCATGTGTGAAGTTCATATCTCAACAGAGCACGGTGATGATGAAGCCCCTAATTGCTCGGCAACGGAAAGAAGCCAGAGCCCAGTAACCAACTGCAGCAGCCTTTCCAATCCATCTTCAGTGGAAGATGAAACTAATAACAGCAATCCATATAGTGACCAGACTGATAATCGGTCAGAAAATTATCATAATTATTGCAAGGATTCTGATCAAGTTGCTACTGGAAATTTATCAAATGGTACTATTATCTGTTCCAATATAGGTGGAGCAGGACTTCCCACAGATGCAGATTCCTTGTTGGACAAGCAGCATTCTGCAGGAATGGCTGGCCCCATTCCAGGTTCTGATGTACTAAAGCTTGAAAACAATCATTCACCAGAGGAACAAGTCACTGAGGACATGAGCGTTGATGACGGGTTGAATTCGCCGGTGTTAACTGGCAGAGAATGTGTGCCATTAGTAGCTAGCTCAGAAGGAGGCTTACCTAATACCCCATGCAAGTTGGAAATACTCAAGGATGGGCCAGGAAGAAATGGGAGATCTAAATCTGGTGGAAAAGATCAAGAAAATGGATCCGGGAAGAGGGAAGGGGCTCGGGACGGGAGCACGTCAAAGAAGAGAAGCGGGGAAAGGCCAGATGAGGGCTGCACAGCAAACGGGTTTTCAGATCACAATTTTGAGTATTACGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGGCACATAGAGAAGAATTTCAGGCAGAAGTTTCTGACTTGGTATAGCTTAAGAGCAAGCCCACAAGAAATGAGGATTGTGAAAATATACATAGACACATTTCTTGAAGATCCAGCATCTCTTGCTGAGCAACTTGTGGACACTTTCACAGAATGCATATCCAGCAAGAGAACTTCAGTGGTGCCGGCAGGATTCTGCATGAAGCTTTGGCATTGA 2235 0.4349 MAADSSIEGLVLDPSKCSKLTMEEKRELVYELSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSAGHETATDSEPQQSSPANGQKPAKRQRKTENPSRLLVPASNVPVNNGGDVGSVTCCKNSACKAALNLADKFCKRCSCCICHQYDDNKDPSLWLICSSESPFPAVSCGLSCHLECALKHVASGIGKDSERPKLDGSFYCVSCGKINDLLGCMRKQLTVAKDTRRVDILCYRVSLCQRLLQGTEMYQKIYEIVDEAVKKLEPDVGPLTSSPAKIGRGIVNRLSSGPGVQKLCGSALESLDSLLSKRISPISPNLTNQVDQSTPIDAKMLAPSMVRFEDITATSLAIILGYENHGENISGFTLWHRKADDEDYAVDPTCTLLLPNRRFSVRDLIPATEYTFKVVSNDSRESGMCEVHISTEHGDDEAPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRSENYHNYCKDSDQVATGNLSNGTIICSNIGGAGLPTDADSLLDKQHSAGMAGPIPGSDVLKLENNHSPEEQVTEDMSVDDGLNSPVLTGRECVPLVASSEGGLPNTPCKLEILKDGPGRNGRSKSGGKDQENGSGKREGARDGSTSKKRSGERPDEGCTANGFSDHNFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRASPQEMRIVKIYIDTFLEDPASLAEQLVDTFTECISSKRTSVVPAGFCMKLWH* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2884 744 MobiDBLite consensus disorder prediction 453 493 - -
Amo01g2884 744 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 744 - -
Amo01g2884 744 MobiDBLite consensus disorder prediction 88 126 - -
Amo01g2884 744 MobiDBLite consensus disorder prediction 92 108 - -
Amo01g2884 744 MobiDBLite consensus disorder prediction 607 647 - -
Amo01g2884 744 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 744 IPR044514 GO:0010048|GO:0040029
Amo01g2884 744 Gene3D Immunoglobulins 351 450 IPR013783 -
Amo01g2884 744 SUPERFAMILY Fibronectin type III 345 430 IPR036116 GO:0005515
Amo01g2884 744 CDD PHD_VIN3_plant 162 227 - -
Amo01g2884 744 MobiDBLite consensus disorder prediction 443 498 - -
Amo01g2884 744 CDD FN3 354 434 IPR003961 GO:0005515
Amo01g2884 744 MobiDBLite consensus disorder prediction 598 651 - -
Amo01g2884 744 ProSiteProfiles Fibronectin type-III domain profile. 354 447 IPR003961 GO:0005515
Amo01g2884 744 Pfam PHD - plant homeodomain finger protein 142 261 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2884 Amo-Chr1 99834856 99839867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2884 4 493 PHD Gene Family AT4G30200 52.682 8.56e-160 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2884 - - adu:107460123 1505.35