Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2882 ATGAAATACATTCGGACCAGCAGCTTGAAGAGGCTCTTCTCTCTGAAAAGGCGTAGTTTTGGAGACCAATCTCTGAGCCGGAGCGGTTCAACCGGTGGTGAAAACTTATATAAGGGCTCAGATACTGTTCTTCTTCCACATGAACAACATTGTTCACCAAGACCCTCTTGGAAGTGCTTCTCCTATGAAGAACTTTTTGATGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGAAAAGGAGGGTATGCAGAGGTATACAAGGGAACACTGAAGGATGGAGAGGAGATTGCAGTGAAGAGGCTCACAAGAACTTGCAGAGATGAGAGGAAAGAGAAAGAGTTTCTAACAGAGATTGGTACAATCGGCCATGTCCACCATAACAATGTTTTGCCACTTCTTGGTTGCTGTATTGACAATGGCCTTTACCTTGTTTTCATGCTATCTACCAGAGGCTCTGTTGCATCCCTTCTTCATGATGAAAAGTTGGATACTTTGGATTGGAAAACAAGGCATAAGATAGCTGTTGGAACTGCACGTGGCCTCCATTACTTGCACAAAGGTTGCAAGAGAAGGATAATCCACCGAGACATTAAGGCATCAAATATTCTTTTGACAGAAGATTTTGAACCTCAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGAGTCATCATTCAATTGGCCCAATAGAAGGGACATTTGGTCATTTGGCACCAGAATACTATCTGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCTTTTGGTGTGTTCTTGCTTGAACTCATTTCTGGAAGAAAACCGGTTGATGGGTCTCACCAAAGCTTGCATACTTGGGCAAAACCAATATTGAAGAAAGGGGAGGAAGAGAAGCTTGTGGATCCAAGGCTTGAAGGGGAGTATGATGGAGGAGAGTTAAAGAGACTTGCCTTTGCAGCATCCTTGTGCATTCGAGCTTCTTCAATTTGGCGACCAACCATGACTCAGGTATTAGAGGTAATGGAAGAGGGTGAAATTGACAAAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAGGAAGATGAAGAGGAAGAGTTTTGGGGTTTTGATGATCTTGAATATGAATATGACACTTCATTATCAATGTCACTACCTGATTCCACTGCAAGTACATATATTTAG 1176 0.4243 MKYIRTSSLKRLFSLKRRSFGDQSLSRSGSTGGENLYKGSDTVLLPHEQHCSPRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTLKDGEEIAVKRLTRTCRDERKEKEFLTEIGTIGHVHHNNVLPLLGCCIDNGLYLVFMLSTRGSVASLLHDEKLDTLDWKTRHKIAVGTARGLHYLHKGCKRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWSHHSIGPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLELISGRKPVDGSHQSLHTWAKPILKKGEEEKLVDPRLEGEYDGGELKRLAFAASLCIRASSIWRPTMTQVLEVMEEGEIDKEKWKMPEEEEEEDEEEEFWGFDDLEYEYDTSLSMSLPDSTASTYI* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2882 391 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Amo01g2882 391 Gene3D Phosphorylase Kinase; domain 1 46 147 - -
Amo01g2882 391 ProSiteProfiles Protein kinase domain profile. 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2882 391 Coils Coil 99 119 - -
Amo01g2882 391 Pfam Protein tyrosine and serine/threonine kinase 75 280 IPR001245 GO:0004672|GO:0006468
Amo01g2882 391 SMART serkin_6 72 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2882 391 Gene3D Transferase(Phosphotransferase) domain 1 150 365 - -
Amo01g2882 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Amo01g2882 391 PANTHER OS08G0249100 PROTEIN 45 371 - -
Amo01g2882 391 SUPERFAMILY Protein kinase-like (PK-like) 50 339 IPR011009 -
Amo01g2882 391 PANTHER OS04G0654600 PROTEIN 45 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2882 Amo-Chr1 99813742 99819477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2882 31 340 Trihelix Transcription Factor Family AT5G38560 42.188 1.56e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo01g2882 PK_Tyr_Ser-Thr 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2882 - - ahf:112697971 786.949