Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2874 ATGGCGGCAATCACCCTAGAGGAGATCAAGAACGAGACTGTTGATTTGGAGCGTATTCCTATTGAGGAAGTGTTCCAGCAACTGAAATGTTCGAGAGAAGGTTTGTCATCGGACGAAGGAGCCAATCGGCTTCAAATATTTGGCCCAAACAAGCTAGAAGAGAAGAAGGAAAGCAAACTCCTCAAGTTTCTTGGGTTCATGTGGAATCCCCTGTCATGGGTCATGGAAGCTGCAGCTATCATGGCTATTGCACTTGCAAATGGTGATAGCAAGCCTCCGGATTGGCAAGATTTCGTTGGTATCATTTGCTTGTTGTTTATTAACTCCACCATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCTGGACTTGCTCCCAAGACTAAGGTCCTTAGAGGTGGAAAATGGTCTGAGGAAGAAGCAGCAATTCTGGTCCCTGGAGACATCATTAGCATCAAACTAGGTGAAATTGAAGCCGTCGTCATTGCAACTGGTGTCCACACATTCTTTGGCAAGGCGGCACACCTCGTGGATAGCACCAACCAAGTTGGACACTTCCAGAAGGTTCTCACAGCAATTGGAAACTTCTGCATATGTTCCATTGCTGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCTATTCAGCATCGCAAATATAGAGATGGAATTGACAACCTGTTGGTCCTCTTGATTGGTGGAATCCCCATTGCTATGCCAACTGTGTTGTCTGTCACAATGGCCATTGGCTCTCACAGGCTCTCTCAGCAGGGTGCTATCACCAAGCGTATGACTGCCATTGAAGAAATGGCCGGCATGGATGTCCTCTGCAGTGACAAGACTGGGACACTCACCCTGAACAAGCTGAGCGTTGACAGGAACTTGATTGAGGTTTTTGCAAAGGGTGTGGACAAGGAACATGTTATCCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAATCAGGATGCAATAGATGCTGCCATTGTTGGAATGCTTGCTGACCCAAAAGAGGCAAGGGCTGGGATAAGAGAGGTGCATTTCTTGCCATTCAATCCAGTTGACAAGAGAACAGCTTTGACTTACATCGATTCTGATGGAAATTGGCACAGGGCGAGCAAAGGTGCTCCTGAGCAGATCATTGCCTTGTGTAACCTTAGGGAAGATGCTAAGAAAAGGTGCCATGCTATTATTGACAAGTTTGCAGACAGAGGGCTTCGTTCGCTCGCTGTTGCTAGACAGGAAGTCCCAGAGAGAACAAAGGAAAGTGCCGGTGGTCCATGGCAGTTTGTTGGTTTGTTGCCACTATTTGATCCCCCAAGACATGATAGTGCTGAGACTATCCGACAAGCTCTTAACCTCGGGGTAAATGTCAAGATGATTACTGGTGATCAACTTGCAATTGCTAAGGAGACCGGCCGGAGGCTTGGGATGGGAACAAATATGTATCCGTCTGCTTCCTTACTTGGTCAAGACAAGGATGCAAGTATTGCTGCACTTCCAGTGGAAGAGCTGATTGAGAAGGCTGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTCAAGAAGTTACAAGAGAGGAAACACATTTGTGGAATGACCGGAGATGGTGTCAATGATGCTCCTGCTTTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACTGAACCAGGATTGAGTGTTATTGTTAGTGCAGTCTTAACCAGCAGAGCTATTTTCCAAAGAATGAAGAACTATACGATCTATGCAGTATCTATCACCATCCGTATAGTGTTTGGCTTCATGCTCATTGCACTTATCTGGAAGTTTGACTTCTCGCCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGAACAATAATGACAATTTCGAAGGATCGTGTGAAACCATCTCCCTTGCCTGACAGCTGGAAACTGCAAGAAATATTCGCCACTGGGACTGTTCTTGGAAGTTACTTGGCATTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAACTAGCTTCTTCCCTGACAAATTTGGAGTTAGACACCTTAGTCATGATGAAATTATGTCTGCTCTGTATCTACAAGTCAGTATTGTTAGCCAGGCTTTGATCTTTGTAACTCGTTCGCGCAGCTGGTCTTTCGTTGAACGCCCCGGATTGTTATTGGTCTCTGCTTTTATTATTGCTCAGCTGATTGCTACAATCATAGCAGTATATGCGGATTGGGGATTTGCAAAGGTGAAAGGAATTGGTTGGGGTTGGGCTGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATATTCCTCTGGACTTCATGAAGTTCGCCATCCGCTACATCTTGAGCGGCAAGGCTTGGGTAAATCTGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAGGAAGAGAGGGAAGCTCAGTGGGCTCTTGCTCAGAGGACTCTGCATGGTCTTCAACCACCGGATACTTCCGGCATCTTCAATGAGAAGAATAGTTATAGGGAACTCTCCGAGATTGCCGAGCAAGCCAAGAGAAGAGCCGAAGTTGCAAGGCTTCGTGAGCTTCACACACTAAAGGGACATGTTGAGTCAGTGGTGAAGCTAAAAGGTTTGGACATTGATACAATCCAACAGCACTATACTGTCTGA 2712 0.4554 MAAITLEEIKNETVDLERIPIEEVFQQLKCSREGLSSDEGANRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGDSKPPDWQDFVGIICLLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRGGKWSEEEAAILVPGDIISIKLGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQIIALCNLREDAKKRCHAIIDKFADRGLRSLAVARQEVPERTKESAGGPWQFVGLLPLFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGTVLGSYLALMTVIFFWAMKETSFFPDKFGVRHLSHDEIMSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVSAFIIAQLIATIIAVYADWGFAKVKGIGWGWAGVIWLYSVVFYIPLDFMKFAIRYILSGKAWVNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPDTSGIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2874 903 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 799 IPR023298 -
Amo01g2874 903 Gene3D - 852 903 - -
Amo01g2874 903 Coils Coil 854 874 - -
Amo01g2874 903 ProSitePatterns E1-E2 ATPases phosphorylation site. 285 291 IPR018303 -
Amo01g2874 903 Pfam haloacid dehalogenase-like hydrolase 279 556 - -
Amo01g2874 903 PANTHER CALCIUM-TRANSPORTING ATPASE 159 883 - -
Amo01g2874 903 CDD P-type_ATPase_H 34 793 IPR006534 GO:0008553|GO:0016021|GO:0120029
Amo01g2874 903 Gene3D - 171 767 - -
Amo01g2874 903 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 158 758 IPR006534 GO:0008553|GO:0016021|GO:0120029
Amo01g2874 903 Gene3D - 295 442 IPR023299 GO:0000166
Amo01g2874 903 SFLD p-type atpase 265 594 IPR044492 -
Amo01g2874 903 SUPERFAMILY HAD-like 279 589 IPR036412 -
Amo01g2874 903 PRINTS H+-transporting ATPase (proton pump) signature 542 558 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g2874 903 PRINTS H+-transporting ATPase (proton pump) signature 712 733 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g2874 903 PRINTS H+-transporting ATPase (proton pump) signature 514 530 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g2874 903 PRINTS H+-transporting ATPase (proton pump) signature 399 417 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g2874 903 PRINTS H+-transporting ATPase (proton pump) signature 573 598 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g2874 903 Gene3D - 280 579 IPR023214 -
Amo01g2874 903 SFLD Haloacid Dehalogenase 265 594 - -
Amo01g2874 903 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 517 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g2874 903 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Amo01g2874 903 PANTHER CALCIUM-TRANSPORTING ATPASE 3 163 - -
Amo01g2874 903 PANTHER PLASMA MEMBRANE ATPASE 3 163 - -
Amo01g2874 903 PANTHER PLASMA MEMBRANE ATPASE 159 883 - -
Amo01g2874 903 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Amo01g2874 903 Gene3D - 159 170 - -
Amo01g2874 903 Gene3D - 66 151 - -
Amo01g2874 903 PRINTS P-type cation-transporting ATPase superfamily signature 459 469 - -
Amo01g2874 903 PRINTS P-type cation-transporting ATPase superfamily signature 565 577 - -
Amo01g2874 903 PRINTS P-type cation-transporting ATPase superfamily signature 542 561 - -
Amo01g2874 903 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Amo01g2874 903 PRINTS P-type cation-transporting ATPase superfamily signature 437 448 - -
Amo01g2874 903 Pfam E1-E2 ATPase 161 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2874 Amo-Chr1 99731362 99736805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2874 5 903 Primary Pumps ATPases AT4G30190 79.592 0.0 1519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2874 K01535 - gmx:100816905 1638.24