Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2872 ATGGAGGGAAATGCAGCAGGTAATAAACGCAGACGTGTTTATTCTGTGGAAGCAAAGAAAGTAGCACAATCTGCATTCACCAGAAACTATGTCAACTATCTTATTCCAGCGTTGACCAAGATCAAGAACCAGAACAGCACCACCACTTCCTCTGATTTCAAGAATGTTAAGTATGAAGTGGACATGGCTATGGCCTTCTCAGCTCAAGGTTTTGCGTGGAGCCATGGTCTGAAACTCAAGCTTCTTCAAAGAGATGAAGACGAAGCACCTACCACTACTGAAAAGGCTTCTTCAAACCCTAGTTTAAAGACATCATCAGATGAAGATGAGAAGATGAAGAGTCAGTTGAGTAGCCTGAGAAAGCTGATACCAGGAGGAGAAGAGATTGTTGATGAAGAAATGGTTACAGAATTAGAGAGTTATATAAGCTGTTTGGAGATGCAGGTCAATGTTCTTCAATGCCTGCTTTCTCTCTCATAG 480 0.4188 MEGNAAGNKRRRVYSVEAKKVAQSAFTRNYVNYLIPALTKIKNQNSTTTSSDFKNVKYEVDMAMAFSAQGFAWSHGLKLKLLQRDEDEAPTTTEKASSNPSLKTSSDEDEKMKSQLSSLRKLIPGGEEIVDEEMVTELESYISCLEMQVNVLQCLLSLS* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2872 159 MobiDBLite consensus disorder prediction 84 116 - -
Amo01g2872 159 PANTHER TRANSCRIPTION FACTOR BHLH146 88 157 - -
Amo01g2872 159 PANTHER TRANSCRIPTION FACTOR BHLH146 8 95 - -
Amo01g2872 159 CDD bHLH_AtIBH1_like 101 156 IPR044549 GO:0006355
Amo01g2872 159 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 8 95 IPR044660 GO:0006355
Amo01g2872 159 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 88 157 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2872 Amo-Chr1 99719170 99719880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2872 8 156 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 38.961 6.11e-27 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2872 - - adu:107461270 300.827