Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2851 ATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCGCGAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGTTCGTTGAATAACAGCGAAGATTCTGTCATTGTTCCAGATGGATCTAACTGCCATGAACATAAATACTGTCAGAAGTGCAACTTGAGAGAAGCTCTTCGAGATAAGGATATTATACGATGTGATGGTACATGCAATCGCACTTTTCACAAAAAATGTCTTGATCCTGCCTTAGACACTGAAAATATTCCTCCTGGAGAACATGGCTGGCTTTGCAAGTTTTGTGGATGTAAGATGGAAATACTGGGGGCAATGAATGCTCATCTTGGAACTCACTTCTCCTTACACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTAAACCTGATGGTGATACTGCATTACTGAACCCTGAGGAAGAATGGCCYTCAGATGATTCTGAAGACGATGATTATGATCCGGAGAGGAGAGAGGTCTGCCATAACATCAACACAGAAGGAAGCAATGATGATGCATCTAATAATTTAAGCAGTTCTACCAGTTTATGTTCTTCGGATGGTGAATGTTCTCTAGTAGATGAAGGTTTCAACCATGAATATTCATCTCTTGATGGATGCATAGATTCTAATGAATCTGAGGAAAATGTCTGTGGCCCCAGGCAGCGAAAAACAGTTGATTACAAGCAACTTTATGATGAAATGTTTGGGAAGGATGCTGCTGCATGTGAACAAGTGAGCGAAGATGAAGACTGGGGTCCTACTAAAAGAAAGCGACGAGACAAGGAGTCTGATGCTGTTGATACTCTTATGACTTTGCATGAATGCCAGAATAGAATTCACAATAGTGAGAACATCAACATGGAACGAGAAGGTTCTCCGAGCAAACAAATCAAGAGGTCTTGTTTTCGGATTCCTCGTGAAGCAGTTGAGAAGCTTCGCCAAGTCTTTGCAGAGAATGAACTTCCTCCAAGATCCACGAAGTTGGCTCTCTCGAAAGAGTTGGGACTTGATATTGAGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTCAGCACTCAAAAGCAGAAAGCAACACACTGAGGGAGCTGATCTGCCTCAGACTTCTGGTTCAAAGGATAACAGGTTACAAGACTCGGAGAGAGCTGAGGTTTCGAAACCAAAAGCATCAGAAAATATTATTAATCATTCTCTGAAGAATGGTAAGGCTGTCAGTGGTAGAAAGAAAAGACGATCAGAAGTATCTCCAACCCAGCGAGAAAAGGGCGATAAGGAGTTGGAGGAGCTCAGTGATGATGTATGCTTGATGAAACTGTTGAAAAATAAAAAGAAGAGGTTGAACTCTGCATTTGAAGGGCACTCACATACAGCAGAGTTGGAYTTTGAAAAACTGAGCAAAGTGAAGGCTAAATTGGATAATTTGAGGCAAAAATTAACTGCAATTCTAAATTACAGGGCAAATGCTTCTAATGCATCCCATTCTAATGAACCATCAATTATGTATGTGCCCACTGCTGTGTTAAGGGAAAAGGTTGCATAG 1644 0.4112 MKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLSIRDAIHQLDSLSSLNNSEDSVIVPDGSNCHEHKYCQKCNLREALRDKDIIRCDGTCNRTFHKKCLDPALDTENIPPGEHGWLCKFCGCKMEILGAMNAHLGTHFSLHSTWQDVFKEEAAKPDGDTALLNPEEEWPSDDSEDDDYDPERREVCHNINTEGSNDDASNNLSSSTSLCSSDGECSLVDEGFNHEYSSLDGCIDSNESEENVCGPRQRKTVDYKQLYDEMFGKDAAACEQVSEDEDWGPTKRKRRDKESDAVDTLMTLHECQNRIHNSENINMEREGSPSKQIKRSCFRIPREAVEKLRQVFAENELPPRSTKLALSKELGLDIEKVSKWFKNARYSALKSRKQHTEGADLPQTSGSKDNRLQDSERAEVSKPKASENIINHSLKNGKAVSGRKKRRSEVSPTQREKGDKELEELSDDVCLMKLLKNKKKRLNSAFEGHSHTAELDFEKLSKVKAKLDNLRQKLTAILNYRANASNASHSNEPSIMYVPTAVLREKVA* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2851 547 CDD homeodomain 333 394 IPR001356 GO:0003677
Amo01g2851 547 SMART HOX_1 330 394 IPR001356 GO:0003677
Amo01g2851 547 SUPERFAMILY FYVE/PHD zinc finger 69 134 IPR011011 -
Amo01g2851 547 PANTHER BNAA01G07010D PROTEIN 1 428 - -
Amo01g2851 547 Pfam PHD-finger 77 131 IPR019787 -
Amo01g2851 547 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 428 - -
Amo01g2851 547 MobiDBLite consensus disorder prediction 442 461 - -
Amo01g2851 547 SMART PHD_3 77 130 IPR001965 -
Amo01g2851 547 ProSiteProfiles Zinc finger PHD-type profile. 75 132 IPR019787 -
Amo01g2851 547 SUPERFAMILY Homeodomain-like 333 395 IPR009057 -
Amo01g2851 547 ProSitePatterns Zinc finger PHD-type signature. 78 129 IPR019786 -
Amo01g2851 547 MobiDBLite consensus disorder prediction 164 189 - -
Amo01g2851 547 CDD PHD_PRHA_like 77 129 IPR045876 -
Amo01g2851 547 MobiDBLite consensus disorder prediction 174 188 - -
Amo01g2851 547 MobiDBLite consensus disorder prediction 279 299 - -
Amo01g2851 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 138 IPR013083 -
Amo01g2851 547 ProSiteProfiles 'Homeobox' domain profile. 330 390 IPR001356 GO:0003677
Amo01g2851 547 MobiDBLite consensus disorder prediction 388 461 - -
Amo01g2851 547 Pfam Homeodomain 340 385 IPR001356 GO:0003677
Amo01g2851 547 Gene3D - 332 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2851 Amo-Chr1 99496211 99506040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2851 1 401 Homeobox Transcription Factor Family AT4G29940 55.990 1.31e-135 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Amo01g2851 Homeodomain 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2851 - - gmx:100817639 693.73