Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2819 ATGTGTAATAAAGGRTTTCAATGTTTCCTGAGCGAGTCTGAGAATCTAATCAATCATCCACATCCACCACAACAACAGCAGYTACACTATAATTTCATGGATAGCCYCACTGTGGCTCAATCACCGCCGGCATCGAGCCTCAACGATGATAGCCGGCGTGTGAAGTTCCTGTGCAGCTTCCTGGGGAGCATAATGCCYCGCCCACAAGATGGGAAGCTGCGGTATGTTGGTGGAGAGACGCGTATTGTGAGTGTTCCAAGAGATGTTAGCTAYGAGGAGTTGATGGGGAGGATGAGGGAACTATATGAAGGTGCTGCTGTGTTGAAGTATCAGCAGCCTGATGAGGATCTTGATGCACTTGTCTCTGTTGTGAATGATGATGATGTAGTTAACATGATGGAGGAGTACGACAAGTTGGGGTCTGGAGATGGGTTCACTAGGCTTAGGATTTTCTTGTTTTCGCAATTCGAGCAGGATGGTTCCTCACACTTYATTGATGGGGAWGACACTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAACGATGATTTCGGTAGGAAGTTGCAACAATCAGAGTTCAWTATGATGAGCCCTGTGGAAGATATCCATGTACCTGAACAGTTCTTTAGTCCACTTAGTGTGGAGAGTGGGATGCTTGGCCACAGAAATGGGGAACTATCTATGTCTCAGTATAATTTGCATCAKCTTGCAATGCAGCARCAGCAGCAGCAATCTATGGGACAGAGGTATAATGAAATGGATGCTCCATGGAATCCTTCCTATTTCTCTCCTAGGCATCATGCTCTCCATGACTCAAGATCGTTGGTGGAATATCCATCTTCTCCCACTGGTACAAGGTACCGTGTACAATTTCCTGAGATGCCGGATAAGAGCATYGATAGAGTGCAGGAAGAGTATGCTCGAATTCATGTGAGTCAACATCCTATCTATGAWAATCAACAGCAATATTCYGAAAATGTAGTTTGGATGCCTACTGGTGAGAAGTCAGGTTTTCCAGGCAACATTCTTCATGGTGCCCATGTCATGGATGGGAACAGTAGATATGGTCAACCACATCCATGTGCGGAATGCCAATCAAACAGGGACAATTTTGCAGTGAATGCGGATGCAAAGTTTCATCCTGGAATCTATCCCAATGAGGATTCAAGAGGACATGCCTCGGGCTCAGGAAGAGTGAATGATCATTATGGCGGTGATGTTCCTGTTCCTGTTCCTGTTCCTGTTACAAATTTCTCCATTGGGCATGGTAGTGTGTCTGATGGACATAACTTATCTTCTAATTATATTCATCAACGAGCTGGACCTGAATTAGGGGCTGAACTTTTCCCTGACCAAACTGCAGCTGCTATACCACATCTGAAACTTCCTTCTCTGGAAGAGCACGGTATGCAGTACAGCAACCCATCTTCTTCCTTTGGAACAGATAATCATTATGCTGTGCCTCGTGGACATGTGCCTGGGCATCCTTTCTGGAGGAACACTCCAACTCCAGTTCATATTGGACCATCATAYGAGGCAACTGCTCCACCTAATGGCATTATAAATGCTGGATTAATCAGGGGGGAGGGCAGTCCTGGATTTTTCATTGGATCAGATGGTCAAAATGCTTGGGTGGATCCCTCACAGAAATTGTCAGGTCATGATGGGTTAGACATCCCAGAACACCCTTCTGCACAAGCGCAGAAACACCCACTTCCAGTAGATAGTCTTCATCCCCCACAGGACAAAAATTCTGGTATCTACACAGAACATGTGCAGCTGCTAAAATCACCTCTTAATATGGTTCTGAACCAAGAGGTTTTAAGAAATGATAYTCATATGACAGAGGCAATGAGTTTGCTATCTCGAAGTTTGCGTGAAGGAAARGAGGAGAAATCCGAGGATATAGTTGAAAAMTGTGCTGCACACSTGCAGAAGATATCTTTTGCAGTGCAGAATAAAACTTCTGAGAATGTAAGCGGAGCTGCTAATCCTGTTGAGTCTAATAATTCAAACGCAAAACCTGCAGAAGAGGTTGCAAATGTTGAAAAACTGAGTAATAAGGACCCACCTGTTCCAGAAGATKCTAAGGATTTGGTCGATCAATTCAGCTTTTTGCCCGAGTTGATGGCTTCTGTCAAAAAGGCTGCATTAGAAGTTGCTGAGGAGGTGAAAACTACAGGTTGCATGAATCCTGATTCTCAGATACAGAATTCACCTCCSAATGAAGACACAACAAATGAAGTTGAACCAGTGAATGCTCATGGTGATCTAGAATTGGATGCTGAAATTGACCACGTAGATACTTCTAAAATTGAGCCTACTGAAGCTGAGGAAGAAGCAATCGCTAGGGGATTGCAGACAATAAAAAATGATGATTTGGAGGAAATCCGTGAACTAGGTTCTGGAACTTATGGGGCTGTTTATCATGGGAAGTGGAAAGGTTCTGATGTTGCTATTAAGAGAATAAAAGCCAGCTGTTTTGCTGGAAGACCGTCCGAAAGGGCTAGATTGATTGCAGATTTCTGGAAAGAGGCATTGATGCTGAGTTCATTGCATCATCCAAATGTTGTCTCTTTCTATGGCATTGTTCGTGATGGCCCTGATGGTTCTTTAGCAACTGTGACGGAATTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGATAGAACGATAGATCGTCGGAAGAGGCTCATCATAGCTATGGATGCTGCATTTGGGATGGARTATTTGCATGGAAAGAATATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCACAACGTCCTGTCTGCAAGATTGGTGATTTAGGTTTATCAAAGGTTAAACAGCACACACTAGTGTCAGGAGGGGTACGTGGAACATTGCCATGGATGGCACCTGAACTTCTTAGTGGGAAAAGTAATATGGTATCGGAGAAGATTGATGTTTATTCATTTGGGATAGTCATGTGGGAATTGCTCACAGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTACGTCCTCAAATCCCGACATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTGCAGAAAGGCCATCTTTTTCAGAAATTTCRAAGAAGCTGAGGAGTATGGCTGCTGCAATGAATGTCAAATAG 3207 0.4322 MCNKGFQCFLSESENLINHPHPPQQQQLHYNFMDSXTVAQSPPASSLNDDSRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDVSYEELMGRMRELYEGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQFEQDGSSHFIDGXDTERRYVDALNSLNDDFGRKLQQSEFXMMSPVEDIHVPEQFFSPLSVESGMLGHRNGELSMSQYNLHXLAMQQQQQQSMGQRYNEMDAPWNPSYFSPRHHALHDSRSLVEYPSSPTGTRYRVQFPEMPDKSIDRVQEEYARIHVSQHPIYXNQQQYSENVVWMPTGEKSGFPGNILHGAHVMDGNSRYGQPHPCAECQSNRDNFAVNADAKFHPGIYPNEDSRGHASGSGRVNDHYGGDVPVPVPVPVTNFSIGHGSVSDGHNLSSNYIHQRAGPELGAELFPDQTAAAIPHLKLPSLEEHGMQYSNPSSSFGTDNHYAVPRGHVPGHPFWRNTPTPVHIGPSYEATAPPNGIINAGLIRGEGSPGFFIGSDGQNAWVDPSQKLSGHDGLDIPEHPSAQAQKHPLPVDSLHPPQDKNSGIYTEHVQLLKSPLNMVLNQEVLRNDXHMTEAMSLLSRSLREGKEEKSEDIVEXCAAHXQKISFAVQNKTSENVSGAANPVESNNSNAKPAEEVANVEKLSNKDPPVPEDXKDLVDQFSFLPELMASVKKAALEVAEEVKTTGCMNPDSQIQNSPPNEDTTNEVEPVNAHGDLELDAEIDHVDTSKIEPTEAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGNEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPAERPSFSEISKKLRSMAAAMNVK* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2819 1068 CDD STKc_MAP3K-like 801 1058 - -
Amo01g2819 1068 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Amo01g2819 1068 ProSiteProfiles Protein kinase domain profile. 795 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2819 1068 Pfam PB1 domain 69 154 IPR000270 GO:0005515
Amo01g2819 1068 PANTHER - 40 270 - -
Amo01g2819 1068 SMART serkin_6 795 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2819 1068 ProSitePatterns Protein kinases ATP-binding region signature. 801 822 IPR017441 GO:0005524
Amo01g2819 1068 Pfam Protein tyrosine and serine/threonine kinase 796 1058 IPR001245 GO:0004672|GO:0006468
Amo01g2819 1068 MobiDBLite consensus disorder prediction 682 697 - -
Amo01g2819 1068 CDD PB1_UP2 57 153 - -
Amo01g2819 1068 PRINTS Tyrosine kinase catalytic domain signature 1029 1051 IPR001245 GO:0004672|GO:0006468
Amo01g2819 1068 PRINTS Tyrosine kinase catalytic domain signature 877 890 IPR001245 GO:0004672|GO:0006468
Amo01g2819 1068 PRINTS Tyrosine kinase catalytic domain signature 985 1007 IPR001245 GO:0004672|GO:0006468
Amo01g2819 1068 PRINTS Tyrosine kinase catalytic domain signature 914 932 IPR001245 GO:0004672|GO:0006468
Amo01g2819 1068 MobiDBLite consensus disorder prediction 660 677 - -
Amo01g2819 1068 MobiDBLite consensus disorder prediction 546 586 - -
Amo01g2819 1068 MobiDBLite consensus disorder prediction 660 697 - -
Amo01g2819 1068 SMART PB1_new 68 153 IPR000270 GO:0005515
Amo01g2819 1068 Gene3D - 72 156 - -
Amo01g2819 1068 PANTHER - 387 1068 - -
Amo01g2819 1068 MobiDBLite consensus disorder prediction 383 411 - -
Amo01g2819 1068 MobiDBLite consensus disorder prediction 469 488 - -
Amo01g2819 1068 SUPERFAMILY Protein kinase-like (PK-like) 787 1056 IPR011009 -
Amo01g2819 1068 MobiDBLite consensus disorder prediction 730 750 - -
Amo01g2819 1068 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 40 270 - -
Amo01g2819 1068 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 387 1068 - -
Amo01g2819 1068 Gene3D Transferase(Phosphotransferase) domain 1 882 1068 - -
Amo01g2819 1068 MobiDBLite consensus disorder prediction 470 484 - -
Amo01g2819 1068 SUPERFAMILY CAD & PB1 domains 70 158 - -
Amo01g2819 1068 Gene3D Phosphorylase Kinase; domain 1 781 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2819 Amo-Chr1 99180852 99186824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2819 48 1068 MAP Kinase Kinase Kinase AT5G57610 53.931 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Amo01g2819 PK_Tyr_Ser-Thr 5.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2819 - - gmx:100779077 1495.72