Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2807 ATGGGCCTTAAGGGGTTGAGGAGCGGCTGGACCGTGCCGCCCAAGCCATGTGACTCCTGCAAGATCGCTTCCGCGGCACTCTTCTGCCGCCCTGATTCCGCCTTCCTCTGCATAGCCTGCGATTCCAAGATTCACTGCGCCAACAAGCTTGCTTCGCGCCACGACCGAGTCTGGATGTGTGAGGTCTGCGAGCAGGCACCTGCTGCGGTCACCTGCAAAGCTGACGCAGCAGCCCTCTGCGTCACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGCATTCCCGTCGAGCCTTTCTTTGACTCTGCCGACTCCATCGTCAAGGCCTCTGCCGCCTCCTTCAGCTTCGTCGTCCCAACCGACAACGGCATCTCCTCTGACGGATTCCCCAACGACGACGCCGCCTGGCTCATTCCCAACCCAAACTACGGCTCAAAGCTTATGGACGCCCCGGACATGAAATCAAGGGAGATGTTCTTCTCAGAAATGGATCCCTTCCTCGATTTCGATTATTCCAACTCCTTCCAGAACAACAACAACAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAATCCAAACCCGCTCCCATGATGAATCACCATGCCGAAGGTAGCTGCTTCGACATCGATTTTTGTAGATCGAAGCTTTCCTCCTTCAACTATCCATCACAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTCTCGGATATATCGTACTCGTTCGGCCGGAACTGCTCCGATTCGAGTGGGATGGGATCGGCGGGAAGTGGCGGCGGAGGTACGCAGCTGTGCGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACCATAAGATACGCTTCGCGTAAGGCTTATGCAGAAACCCGACCCAGGATCAAGGGCCGGTTCGCTAAACGGACCGAAATCGAGTCGGAGGTGGATCGTCTCTACAGCCCCGGCGGTGGTGTCCCAGGGTGTCTCATGCTGGACAACCAATACGGCGTCGTACCATCGTTTTAG 1095 0.5699 MGLKGLRSGWTVPPKPCDSCKIASAALFCRPDSAFLCIACDSKIHCANKLASRHDRVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERIPVEPFFDSADSIVKASAASFSFVVPTDNGISSDGFPNDDAAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNNNNNSAGNDSVVPVQSKPAPMMNHHAEGSCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGGGTQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVPGCLMLDNQYGVVPSF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2807 364 CDD Bbox1_BBX-like 16 59 - -
Amo01g2807 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 364 IPR045281 GO:0009909
Amo01g2807 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 364 - -
Amo01g2807 364 ProSiteProfiles CCT domain profile. 289 331 IPR010402 GO:0005515
Amo01g2807 364 SMART bboxneu5 60 102 IPR000315 GO:0008270
Amo01g2807 364 SMART bboxneu5 12 59 IPR000315 GO:0008270
Amo01g2807 364 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
Amo01g2807 364 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Amo01g2807 364 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Amo01g2807 364 Pfam CCT motif 289 331 IPR010402 GO:0005515
Amo01g2807 364 CDD Bbox1_BBX-like 60 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2807 Amo-Chr1 99036705 99039244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2807 3 364 C2C2-CO-like Transcription Factor Family AT5G57660 54.255 1.28e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo01g2807 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2807 - - gmx:100805693 572.778