Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2806 ATGGGATCCTCCCTGAGTTGCTGTGGCTCTGACAAAATTGAAGAAGCAGCGCAAACAGCATTTGGTGCAGTTAACAATTCATGGAGAATATTCACGTACAAGGAGCTGCATGCAGCTACGAATGGATTCAGTGAGGACAATAAGCTTGGTGAAGGTGGATTTGGAAGCGTGTATTGGGGAAAAACAAGTGATGGTCATGAGATAGCGGTGAAGAAACTGAAGGCAATGAACTCGAAGGCAGAGATGGAATTTGCGGTAGAAGTAGAAGTACTGGGAAGGGTTAGGCACAAGAATTTGTTGGGACTGAGAGGGTACTGTGCAGGGAATGAAGAAAGGCTTATAGTGTACGATTACATGGCGAATCTGAGCCTTCTTTCTCATCTGCATGGGCAGTTTGCAAATGAAGTGCAACTGGATTGGAAAAGGAGAATGAAGATTGCAATTGGATCTGCAGAAGGAGTGTTGTATTTGCACCATGACGTCACACCACACATCATCCACAGAGACATCAAAGCAAGCAACGTTCTTCTCAACTCAGACTTCGAGCCGCTTGTTGCTGACTTCGGCTTCGCTAAGCTGATCCCTGAAGGGGTTAGCCACATGACTACCCGTGTTAAGGGCACTTTGGGATACTTGGCACCCGAATACGCCATGTGGGGAAAAGTCTCCGAGAGTTGCGATGTTTATAGCTTTGGGATTCTTCTCTTGGAGCTTGTAACTGGAAGAAAGCCAATTGAGAAGCTCCCTGGTGGGATTAAGAGAACCATAACCGAATGGGCTGAGCCATTCATAAGTAAATCAAGGTTCGGGGATCTTGTTGATCCTAAACTCAGAGGTAACTTTGATGAGAATCAGGTGAAGCAAGCCATTCATGTGGCTGCACTTTGCGTGCAGAGTGAGCCTGATAAGAGACCCAACATGAAGCAAGTGGTTAACCTTCTCAAAGGGTATGAACCCAATCATAACACTGTTTTGAACACTAGGCTTCACACTAGCCTAGCTATCTTCACAATGGTGCTTGCTTACCCTTCTAAGGTGCTAGTTGGACTCTCTTTGGACTCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTCCTTGCCAATCCAAATGACAGCATTGTGGCAGTGCATGTTCTTGTTACTGAGGATAAGAAGAAGCGCGCCTCGGTCAGAAAGAGGCAATCACAACTAAGGCAGGCAAAGGCTCATGTTATATCTATGCTTGGAGAATTTGCACAAACATGTTGGTCTAAGCAGGTTAATCTGGAGGCAAGAGTGGCATTCAGTTCCACAGTAGGTGGAGGTTTAGCTGAGGAAGCCAAGTCCATCAATGCCGATTTTCTTCTTCTACGTGGCTCAAGAAATCCAAAAAACAAGAATGGAAGTTCCAAGGGAATTAGCAAGTATTGCTTTGAGCATGCACATGAAGGCTGCACTGTGGTCTCGGTTGGGAAATTCGCCAAGGCAGAGCAAGGCTCCAGTTCAAATCCGAAGCATTCTCAAGATGATAGTGAAGCAAGTTCTAAATGGTTATCTAAGGATGATGACAATCAAGGTGACACGGCTGCTACCTTCCCTGTTCTGAATGAATTCATGTCTGACTCTGAGTCTAAAGAACAGAACAGTTCGCCAAGAACAGTACTAGATGCGCTGGAAGGGCAATCTAACAGCACAGAAGATGATACATTCAGCACTATGGTCTCAAGCACCTGCACCACAGATACACCTAAGAGAAGATCAAAACCTCAATCTCCCTTGAGGCGCATAGCCTCCTTCCTCGGATCACCATTCCGAAGAAAACATAGCATGTCCAAGAATGAAAAGGCTCAACCCTTGTTGAAGTGCTTCAGCTATGAACAGATAGCCAATGCTACTAATGAATTCCACCAAGATAATTTGGTCGGGAGAGGCGGATACTCGGAAGTATACAAAGGTGATCTTTGTGATGGAAGAAGCATTGCTGTGAAGAGATTGGCGAAGGACAACAATGATCCTAACAAGGAGAAAGAGTTCCTTATGGAATTGGGAGTTATTGGACATGTCTGCCATCCTAACACTGCATCCTTAGTTGGATGCTGCGTCGAAAATGGACTCTATCTAGTCTTCAATTACTCTCAGAATGGAAACTTGGCAACTGCACTGCACGGTGGAGATTCACTTGATTGGCCAATCAGATACAAGATTGCTATTGGAGTTGCAAGGGGGCTCCATTACCTTCATAAATGTTGCAAACACAGAATAATTCATCGCGATATCAAAGCTTCCAATGTTCTTCTAGGCCCTGATTATGAGCCAGAGATAACAGATTTTGGGCTTGCAAAGTGGCTTCCAAACAAGTGGAGTCATCATGCAGTGATCCCAGTAGAAGGGACATTCGGATACTTAGCACCAGAGTACTTCATGCATGGAATAGTGGATGAGAAAACAGATGTTTTTGCATTTGGTGTTCTTCTTCTTGAGATTGTAACTGGACGCAGACCTGTTGATTCATCAAGCCAAAACCTTCTCCTTTGGGCAAAGCCTCTGATGGAATCAGGGAATATTGGAGAGCTAGCTGATCCAAAAATGAATGGTAAATATGATGAAGAGCAACTCTATAGGTTGGTGCTTACAGCTTCATACTGTGTCAGACAAAATGCCACGTGGCGCCCTCCAATGAGCGAGGTGTTAGAGTTGCTGGCAAGTGGGAATGACTGTGAGGCAGGGAAAAGTTGGAGGATCCCAAAATTCACTTCAGATGAATTGGATGATTATTCCATGGTGTTTGGATATGATGTCCCCTCACACATATCTCTCGAGGATTTTCTCTGA 2817 0.4491 MGSSLSCCGSDKIEEAAQTAFGAVNNSWRIFTYKELHAATNGFSEDNKLGEGGFGSVYWGKTSDGHEIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGNEERLIVYDYMANLSLLSHLHGQFANEVQLDWKRRMKIAIGSAEGVLYLHHDVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGIKRTITEWAEPFISKSRFGDLVDPKLRGNFDENQVKQAIHVAALCVQSEPDKRPNMKQVVNLLKGYEPNHNTVLNTRLHTSLAIFTMVLAYPSKVLVGLSLDSDDSKELLSWAIRVLANPNDSIVAVHVLVTEDKKKRASVRKRQSQLRQAKAHVISMLGEFAQTCWSKQVNLEARVAFSSTVGGGLAEEAKSINADFLLLRGSRNPKNKNGSSKGISKYCFEHAHEGCTVVSVGKFAKAEQGSSSNPKHSQDDSEASSKWLSKDDDNQGDTAATFPVLNEFMSDSESKEQNSSPRTVLDALEGQSNSTEDDTFSTMVSSTCTTDTPKRRSKPQSPLRRIASFLGSPFRRKHSMSKNEKAQPLLKCFSYEQIANATNEFHQDNLVGRGGYSEVYKGDLCDGRSIAVKRLAKDNNDPNKEKEFLMELGVIGHVCHPNTASLVGCCVENGLYLVFNYSQNGNLATALHGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPEITDFGLAKWLPNKWSHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIVTGRRPVDSSSQNLLLWAKPLMESGNIGELADPKMNGKYDEEQLYRLVLTASYCVRQNATWRPPMSEVLELLASGNDCEAGKSWRIPKFTSDELDDYSMVFGYDVPSHISLEDFL* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2806 938 MobiDBLite consensus disorder prediction 554 581 - -
Amo01g2806 938 Pfam Universal stress protein family 345 483 IPR006016 -
Amo01g2806 938 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 344 477 - -
Amo01g2806 938 PANTHER OS08G0249100 PROTEIN 23 321 - -
Amo01g2806 938 PANTHER OS08G0249100 PROTEIN 343 928 - -
Amo01g2806 938 Gene3D Phosphorylase Kinase; domain 1 5 118 - -
Amo01g2806 938 Gene3D Phosphorylase Kinase; domain 1 593 706 - -
Amo01g2806 938 ProSiteProfiles Protein kinase domain profile. 630 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2806 938 MobiDBLite consensus disorder prediction 504 518 - -
Amo01g2806 938 CDD STKc_IRAK 49 316 - -
Amo01g2806 938 PANTHER OS08G0249100 PROTEIN 23 321 - -
Amo01g2806 938 PANTHER OS08G0249100 PROTEIN 343 928 - -
Amo01g2806 938 Pfam Protein kinase domain 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2806 938 Pfam Protein kinase domain 630 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2806 938 SUPERFAMILY Protein kinase-like (PK-like) 604 895 IPR011009 -
Amo01g2806 938 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2806 938 SMART serkin_6 630 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2806 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Amo01g2806 938 SUPERFAMILY Protein kinase-like (PK-like) 26 330 IPR011009 -
Amo01g2806 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Amo01g2806 938 MobiDBLite consensus disorder prediction 491 524 - -
Amo01g2806 938 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Amo01g2806 938 MobiDBLite consensus disorder prediction 554 588 - -
Amo01g2806 938 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Amo01g2806 938 Gene3D HUPs 336 485 IPR014729 -
Amo01g2806 938 ProSiteProfiles Protein kinase domain profile. 43 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2806 938 CDD USP_Like 345 485 - -
Amo01g2806 938 Gene3D Transferase(Phosphotransferase) domain 1 708 907 - -
Amo01g2806 938 Gene3D Transferase(Phosphotransferase) domain 1 119 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2806 Amo-Chr1 99018023 99024254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2806 618 895 Trihelix Transcription Factor Family AT5G38560 42.414 5.35e-65 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Amo01g2806 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2806 - - ccaj:109809416 974.156