Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2793 ATGGCTAATAACAAGATCTTGTCATACCTTGTGGGATGGCTTGTCATAATGTTTTTGGTTGCGCCAAGTACAGCATCCATGGAAGAAACAGTGAAACTGCGAGTAGGGGTGCCCAAGAAAGAAGGCTTCCCGGAATTTGTGAACGTAATATGGGACGAAGATGAGCACAAGTACAATGTCAGTGGATATTGCATGGATGTTTTCAATGCCGTATTAACCTTCTTACCTTTCAAAGTTTCACTACAAATTGAAGCTTACGACGTTAATGAATCAGGACAGAGCAGCACTGGAACATACGATGCACTTGTACAACAAATCCCCCAAAAGTATGATGTTGTGGTAGGGGATATCACAATACTAGCGAATCGTTCGAAGTTTGTTGATTTCACGTTGCCATATACAGAATCAGGAGTTCAAATGGTTGTAGCAGCTCGGCAGGGAAGGGAGCAAAGCATGTGGACTTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTAAGCATAGTTATGATCTCTATGTTCATAGGTTCTGTCATACTCATCATGGAAAGGAACAAGCAGGTAGCCAATTCGCAACAACTAAGCCCAATCTACTTCTTATGGTTTCCAATTTCTCAAGCCGTTCTTCCTGAAAGAGAGGGAGTAGTGAAGAAGTGCTCAAGGTTTGTGTTGATGGTGTGGCTTCTGTTGGCGTTTGTGCTGATGCAAAGCTACACGGCGAGCTTGACGACCATGATGACGGTGGAGCAGCTTCAACCGAGTTTTCTGAACGTGGATGATCTACGCACAGGGGATTACTATGTTGGATACCAAACTGGATCATTCGTTTATGATCTCTTGCTACACAAGTGGAAATTCAACCCTTCCAAGCTCAGGGCTTATGGCAGCGTTTCTCAATATCACCAAGCTTTGAAGATTGGAAGCCGTGGCGGTGGCGTTTCAGCTATAGTCGATGAACTTCCCTACCTTAAACTCTTCCTTCAAAAATATGGATCTAATTACATGATCGCTGGTCCAACCTATCGAACTGCTGGCTTTGGTTTTGCATTTGCAAGAAACTCTAATCTTACAGCTGCGTTTTCAAGAGGGATTCTGGAAGTGACTGAGAGTGACGAAATGGATAAGATCGAGGCAAAATATTTTGGCAAGATTATGAATAATGGATGGCAAGACCAAGCTGATGCTTCAACAACAACGTCCTCGTCGTCTTCTCCGAGCAGTCTCACGTTTTATAGCTTTTCAGGGCTGTTCCTCGTAACAGGAAGTGCAACTTTGTTGGCATTATTTGTCTCCGAGACAGTGATTTGGCGAACACCAATTTCCATGGCCAAAGCATATAGTCGCAAATATTTGTTCCGCACTACTAGTTCTACTTCTACGCAAACTCATCCAACAACCGATGATGATTCTTCATCACATACAACGGAATCCGTTTAA 1434 0.4338 MANNKILSYLVGWLVIMFLVAPSTASMEETVKLRVGVPKKEGFPEFVNVIWDEDEHKYNVSGYCMDVFNAVLTFLPFKVSLQIEAYDVNESGQSSTGTYDALVQQIPQKYDVVVGDITILANRSKFVDFTLPYTESGVQMVVAARQGREQSMWTFVKPFSWDLWLSIVMISMFIGSVILIMERNKQVANSQQLSPIYFLWFPISQAVLPEREGVVKKCSRFVLMVWLLLAFVLMQSYTASLTTMMTVEQLQPSFLNVDDLRTGDYYVGYQTGSFVYDLLLHKWKFNPSKLRAYGSVSQYHQALKIGSRGGGVSAIVDELPYLKLFLQKYGSNYMIAGPTYRTAGFGFAFARNSNLTAAFSRGILEVTESDEMDKIEAKYFGKIMNNGWQDQADASTTTSSSSSPSSLTFYSFSGLFLVTGSATLLALFVSETVIWRTPISMAKAYSRKYLFRTTSSTSTQTHPTTDDDSSSHTTESV* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2793 477 Pfam Ligand-gated ion channel 383 421 IPR001320 GO:0015276|GO:0016020
Amo01g2793 477 SUPERFAMILY Periplasmic binding protein-like II 6 382 - -
Amo01g2793 477 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 470 - -
Amo01g2793 477 MobiDBLite consensus disorder prediction 456 477 - -
Amo01g2793 477 Gene3D - 344 380 - -
Amo01g2793 477 Gene3D - 26 152 - -
Amo01g2793 477 Gene3D - 153 282 - -
Amo01g2793 477 CDD GluR_Plant 32 380 - -
Amo01g2793 477 SMART GluR_14 32 382 IPR001320 GO:0015276|GO:0016020
Amo01g2793 477 Gene3D - 313 343 - -
Amo01g2793 477 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 22 470 - -
Amo01g2793 477 Pfam Bacterial extracellular solute-binding proteins, family 3 60 382 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2793 Amo-Chr1 98782907 98785269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2793 32 462 Ion Channels AT2G29110 40.397 2.44e-84 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2793 K05387 - gmx:100811144 546.584