Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo01g2789 | ATGGAGTCACAGATTGCCATACAAGAAGCTGCTTCCGCTGGTTTGAAGAGCATGGAGCATCTCATCCGACTTCTCTCTTCACAATCCCCTTCTTCTTCTTCTTCTTCTTCTCACGATAATCACTACCGCATCGATCTCAATAACCGTGACTGCACAGAAATCACCGACTTCACAGTTTCAAAGTTCAAACAGGTTATTAACTTGTTGAATCGCACCGGTCATGCTCGCTTCCGTCGCGCACCTTCTCAATCTCAACCTCAGCTTGACCAATCAAAAGTCGTAGTGCCACCTCCTCCTCCTCAGGGTTTGACTCTAGATTTTGCTAAGCCCGTTCAGGTCAACCAGCCATCAATTAATAATCCAAATAACCACTCAAAGTCTAAGAATAATAATAATAATCCAAATACATCATGTAGCACATCGCTTTCTCCTCCCATGTCCACCACCACCTCCTCCTTCATGTCCACCATCACCGGAGATGGCAGCGTCTCCGACGGTAAGATAGGTCCTTTCATCATCGCCGCTGGGAAGCCTCCTCTCTCCTCATCTCACCGTAAAAGGTGTCACGACGCCACCCTTTCCTCGGGAAAAGCCACATCCTCCTCCTCCCAGTGTCATTGCTCCAAGAGAAGGAAAACCCGTGTGAAACGAGTGGTTCGAATGGCGGCAATAAGCTCAAGGATTGCAGATATCCCAACCGACGAATACTCGTGGAGGAAATACGGTCAAAAACCTATCAAGGGATCACCCTACCCTCGTAGTTACTACAGGTGCAGTAGCGTGAGAGGGTGTCCAGCCAGGAAGCACGTGGAGAGAGCACAAGACGACCCCAACACGCTCATCGTTACTTACGAGGGTGACCACCGCCACACCCAAACACAACCACAACCCGTTGGATTTTCCCCTCAGCATCTTTCATCAACGGCACTCACGCCTGCCACCTGA | 945 | 0.4963 | MESQIAIQEAASAGLKSMEHLIRLLSSQSPSSSSSSSHDNHYRIDLNNRDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSQSQPQLDQSKVVVPPPPPQGLTLDFAKPVQVNQPSINNPNNHSKSKNNNNNPNTSCSTSLSPPMSTTTSSFMSTITGDGSVSDGKIGPFIIAAGKPPLSSSHRKRCHDATLSSGKATSSSSQCHCSKRRKTRVKRVVRMAAISSRIADIPTDEYSWRKYGQKPIKGSPYPRSYYRCSSVRGCPARKHVERAQDDPNTLIVTYEGDHRHTQTQPQPVGFSPQHLSSTALTPAT* | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo01g2789 | 314 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 1 | 293 | - | - | |
Amo01g2789 | 314 | Gene3D | WRKY domain | 218 | 293 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Amo01g2789 | 314 | Pfam | WRKY DNA -binding domain | 234 | 290 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Amo01g2789 | 314 | SUPERFAMILY | WRKY DNA-binding domain | 230 | 292 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Amo01g2789 | 314 | MobiDBLite | consensus disorder prediction | 77 | 91 | - | - | |
Amo01g2789 | 314 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 1 | 293 | IPR044810 | GO:0003700 | |
Amo01g2789 | 314 | MobiDBLite | consensus disorder prediction | 77 | 158 | - | - | |
Amo01g2789 | 314 | MobiDBLite | consensus disorder prediction | 176 | 208 | - | - | |
Amo01g2789 | 314 | Pfam | Plant zinc cluster domain | 185 | 230 | IPR018872 | - | |
Amo01g2789 | 314 | ProSiteProfiles | WRKY domain profile. | 227 | 293 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Amo01g2789 | 314 | MobiDBLite | consensus disorder prediction | 108 | 158 | - | - | |
Amo01g2789 | 314 | SMART | WRKY_cls | 232 | 292 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Amo01g2789 | 314 | MobiDBLite | consensus disorder prediction | 285 | 314 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo01g2789 | Amo-Chr1 | 98642999 | 98644438 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo01g2789 | 1 | 296 | WRKY Transcription Factor Family | AT2G24570 | 48.308 | 1.36e-83 | 253 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Amo01g2789 | WRKY | 2.2e-26 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo01g2789 | - | - | gmx:732589 | 368.237 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo01g2789 | 01 | 98642999 | 98644438 | Amo13g2549 | 13 | 46775999 | 46778313 | PCT | |
Amo01g2789 | 01 | 98642999 | 98644438 | Amo03g1120 | 03 | 25340285 | 25342906 | PCT | |
Amo13g2549 | 13 | 46775999 | 46778313 | Amo01g2789 | 01 | 98642999 | 98644438 | PCT | |
Amo03g1120 | 03 | 25340285 | 25342906 | Amo01g2789 | 01 | 98642999 | 98644438 | PCT |