Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2789 ATGGAGTCACAGATTGCCATACAAGAAGCTGCTTCCGCTGGTTTGAAGAGCATGGAGCATCTCATCCGACTTCTCTCTTCACAATCCCCTTCTTCTTCTTCTTCTTCTTCTCACGATAATCACTACCGCATCGATCTCAATAACCGTGACTGCACAGAAATCACCGACTTCACAGTTTCAAAGTTCAAACAGGTTATTAACTTGTTGAATCGCACCGGTCATGCTCGCTTCCGTCGCGCACCTTCTCAATCTCAACCTCAGCTTGACCAATCAAAAGTCGTAGTGCCACCTCCTCCTCCTCAGGGTTTGACTCTAGATTTTGCTAAGCCCGTTCAGGTCAACCAGCCATCAATTAATAATCCAAATAACCACTCAAAGTCTAAGAATAATAATAATAATCCAAATACATCATGTAGCACATCGCTTTCTCCTCCCATGTCCACCACCACCTCCTCCTTCATGTCCACCATCACCGGAGATGGCAGCGTCTCCGACGGTAAGATAGGTCCTTTCATCATCGCCGCTGGGAAGCCTCCTCTCTCCTCATCTCACCGTAAAAGGTGTCACGACGCCACCCTTTCCTCGGGAAAAGCCACATCCTCCTCCTCCCAGTGTCATTGCTCCAAGAGAAGGAAAACCCGTGTGAAACGAGTGGTTCGAATGGCGGCAATAAGCTCAAGGATTGCAGATATCCCAACCGACGAATACTCGTGGAGGAAATACGGTCAAAAACCTATCAAGGGATCACCCTACCCTCGTAGTTACTACAGGTGCAGTAGCGTGAGAGGGTGTCCAGCCAGGAAGCACGTGGAGAGAGCACAAGACGACCCCAACACGCTCATCGTTACTTACGAGGGTGACCACCGCCACACCCAAACACAACCACAACCCGTTGGATTTTCCCCTCAGCATCTTTCATCAACGGCACTCACGCCTGCCACCTGA 945 0.4963 MESQIAIQEAASAGLKSMEHLIRLLSSQSPSSSSSSSHDNHYRIDLNNRDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSQSQPQLDQSKVVVPPPPPQGLTLDFAKPVQVNQPSINNPNNHSKSKNNNNNPNTSCSTSLSPPMSTTTSSFMSTITGDGSVSDGKIGPFIIAAGKPPLSSSHRKRCHDATLSSGKATSSSSQCHCSKRRKTRVKRVVRMAAISSRIADIPTDEYSWRKYGQKPIKGSPYPRSYYRCSSVRGCPARKHVERAQDDPNTLIVTYEGDHRHTQTQPQPVGFSPQHLSSTALTPAT* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2789 314 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 293 - -
Amo01g2789 314 Gene3D WRKY domain 218 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g2789 314 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g2789 314 SUPERFAMILY WRKY DNA-binding domain 230 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g2789 314 MobiDBLite consensus disorder prediction 77 91 - -
Amo01g2789 314 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 293 IPR044810 GO:0003700
Amo01g2789 314 MobiDBLite consensus disorder prediction 77 158 - -
Amo01g2789 314 MobiDBLite consensus disorder prediction 176 208 - -
Amo01g2789 314 Pfam Plant zinc cluster domain 185 230 IPR018872 -
Amo01g2789 314 ProSiteProfiles WRKY domain profile. 227 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g2789 314 MobiDBLite consensus disorder prediction 108 158 - -
Amo01g2789 314 SMART WRKY_cls 232 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g2789 314 MobiDBLite consensus disorder prediction 285 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2789 Amo-Chr1 98642999 98644438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2789 1 296 WRKY Transcription Factor Family AT2G24570 48.308 1.36e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo01g2789 WRKY 2.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2789 - - gmx:732589 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2789 01 98642999 98644438 Amo13g2549 13 46775999 46778313 PCT
Amo01g2789 01 98642999 98644438 Amo03g1120 03 25340285 25342906 PCT
Amo13g2549 13 46775999 46778313 Amo01g2789 01 98642999 98644438 PCT
Amo03g1120 03 25340285 25342906 Amo01g2789 01 98642999 98644438 PCT