Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2786 ATGATGTTATCGTCTACTAATAATAATAGAGTGATGAAGATGGAAGATGATGCAGAAGAAGAAGAAGAAGAATGCATGACTGGGCTTTCTCTTGCTCTGGCGGGAACAGTAGTGCCAAACAAGAAGAAAAACAAGCCTCTTATGGTTTCCCTTCATCAGAAGAAATTCTGTTCTACTCATCAGAGAATCGATGATGATGGAGGACACCACCACCACCATCACAACAACAAGAAACTCAGGCTTACAAAGGAGCAATCAACCATGCTTGAAAACAGCTTCAACCAGCATACCACTCTTAATTCAGCCCAGAAAAAATCACTTGCTGAAGAATTGAATCTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGATTGTGAGTTGTTGAAGAAACGGTGCCAAAGTTTAACAGATGAGAACCGAAGGTTGAAGAAGGAGTTGGAGGAAGTAACTGCTGCACTCGAAGCTACAACAACAACATCGCCACCATCATTATACATTCAACACTCCAAAGCTTCACCGGCTACCACTCTCACTATGTGTTCTTCATGCCACAAACTGCTCCTTCCAAATTCAAATTAA 618 0.4159 MMLSSTNNNRVMKMEDDAEEEEEECMTGLSLALAGTVVPNKKKNKPLMVSLHQKKFCSTHQRIDDDGGHHHHHHNNKKLRLTKEQSTMLENSFNQHTTLNSAQKKSLAEELNLKTRQIEVWFQNRRARTKLKQTEVDCELLKKRCQSLTDENRRLKKELEEVTAALEATTTTSPPSLYIQHSKASPATTLTMCSSCHKLLLPNSN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2786 205 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Amo01g2786 205 SMART halz 132 175 IPR003106 GO:0006355|GO:0043565
Amo01g2786 205 Gene3D - 68 138 - -
Amo01g2786 205 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 26 198 - -
Amo01g2786 205 Coils Coil 124 172 - -
Amo01g2786 205 Coils Coil 4 24 - -
Amo01g2786 205 SUPERFAMILY Homeodomain-like 60 133 IPR009057 -
Amo01g2786 205 PANTHER - 26 198 - -
Amo01g2786 205 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Amo01g2786 205 SMART HOX_1 74 136 IPR001356 GO:0003677
Amo01g2786 205 Pfam Homeobox associated leucine zipper 132 166 IPR003106 GO:0006355|GO:0043565
Amo01g2786 205 CDD homeodomain 77 133 IPR001356 GO:0003677
Amo01g2786 205 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2786 Amo-Chr1 98613765 98614806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2786 64 198 Homeobox Transcription Factor Family AT3G60390 58.519 1.88e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo01g2786 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2786 K09338 - lang:109339930 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2786 01 98613765 98614806 Amo03g1138 03 25914048 25916028 PCT
Amo03g1138 03 25914048 25916028 Amo01g2786 01 98613765 98614806 PCT