Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2784 ATGGGAGCTCAGAACTCATCATGGTCCCATCACACTTCAGGAGCATTGTTTTTCTTCCTTGGAGGGATAATAGTGCTTATCATATTGCTCATTCTTCTCTTTGTCTATTGGATGGTTATTAAACGGAGATCACCACAAGAGGCAGAGGAGAAAATGGAAAAGAAACCTTCAATAATGAGTCAACACCATGATGAGGTGGTGAAGGTAACATTTTCAAGCAAACAACAGCCAGGATCAATGGACTTCTTTAGTGGGAGCCTTGGGACAATTAGTCACTTCAACCTGAACACATTGAGAAGGGCAACCAGGAATTTTCATAGCAAAAATCTTCTTGGAAGTGGTGGTTTTGGCCCTGTTTATCAGGGAAAGTTGGCAGATGGAAGGCTAGTTGCTGTTAAGCAATTGTCTGCTGAGAAATCCCAACAAGGAGAAAAAGAGTTCTTGGCAGAGGTGAGATTAATCACAAGCATCCAACACAAGAATCTTGTTCGCCTTCTTGGTTGTTGTACTGATGGATCTCAAAGGATTCTTGTCTATGAATACATGAAGAACAAAAGTTTGGACCGCATCCTATATGGAAAAAGTGACCAATTCCTGGATTGGAGCACTAGATTCCAAATTATTCTTGGAGTGGCACGGGGATTGCAATATCTACATGAGGATTCGCATTTGAGAATTGTTCACAGAGATATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCAAAGATTGGAGACTTTGGGCTAGCTAGATTCTTTCCAGAAGATCAAGCTTACCTTAGCACTCAATTTGCTGGAACATTAGGTTATACGGCTCCTGAATATGCTATTAGAGGAGAACTATCAGAAAAGGCCGATATCTACAGTTTTGGAGTTCTTGTACTTGAAATTATAAGTTGCAGAAAGAATACAGATCTTACTTTACCATCAGAAATGCAATACCTTCCTGAATATGCATGGAAGCTTTATGAGAAGTCAATGGTGATGGGACTGGTGGATCCAAAGCTAAGGGAACATGGATTGGTGGAGAAGGATGTGATGAGAGCACTCCACGTGGCATTCTTGTGCCTACAGCCTCATGCAGGTCTGAGACCAGCCATGTCAGAGATCGTGGCACTGTTGACATTCAAAGTTGAAATGGTGTCAACACCAATGAGGCCATCGTTCTTTGATCGGAGACCCAAGAAGCACGATGAGGACATGCCCTCTTGGGAAGCCATATCAGACACTTTCTCAGTTCCAATCATAACTGATTCTAATCTTCCAACATCTGAAGATCGCTGA 1290 0.4194 MGAQNSSWSHHTSGALFFFLGGIIVLIILLILLFVYWMVIKRRSPQEAEEKMEKKPSIMSQHHDEVVKVTFSSKQQPGSMDFFSGSLGTISHFNLNTLRRATRNFHSKNLLGSGGFGPVYQGKLADGRLVAVKQLSAEKSQQGEKEFLAEVRLITSIQHKNLVRLLGCCTDGSQRILVYEYMKNKSLDRILYGKSDQFLDWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMVMGLVDPKLREHGLVEKDVMRALHVAFLCLQPHAGLRPAMSEIVALLTFKVEMVSTPMRPSFFDRRPKKHDEDMPSWEAISDTFSVPIITDSNLPTSEDR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2784 429 SUPERFAMILY Protein kinase-like (PK-like) 84 379 IPR011009 -
Amo01g2784 429 Gene3D Transferase(Phosphotransferase) domain 1 182 385 - -
Amo01g2784 429 Pfam Protein tyrosine and serine/threonine kinase 107 317 IPR001245 GO:0004672|GO:0006468
Amo01g2784 429 ProSiteProfiles Protein kinase domain profile. 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2784 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Amo01g2784 429 SMART serkin_6 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2784 429 Gene3D Phosphorylase Kinase; domain 1 79 181 - -
Amo01g2784 429 PANTHER RECEPTOR-LIKE KINASE 84 391 - -
Amo01g2784 429 CDD STKc_IRAK 111 377 - -
Amo01g2784 429 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 84 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2784 Amo-Chr1 98599878 98602134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2784 93 392 Receptor kinase-like Gene Family AT1G56120 50.667 1.59e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo01g2784 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2784 - - ccaj:109792436 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2784 01 98599878 98602134 Amo03g1144 03 26016449 26019339 PCT
Amo03g1144 03 26016449 26019339 Amo01g2784 01 98599878 98602134 PCT