Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2777 ATGATGCCTACTACTACCACTACTCTTCTTGATCTCAATCAAGATCTAACTCTAAGCCATGATGATGACCAAGAACACCAGCAACAACAACAACAACAACAACCCTCTTCTCTTTCATTTCCAATCCTCCTCAACCCCCTACCTCATCAAAAGGTTGAGAAGATTGATGATGCTAATTGTAGTAGTGGATCACGGGATCATTCAGAAAAACCTAATCACGGCAGTGGAATCATCAAGCTGATTTGGAAGAATAAGAAACGAGATGAGGCAGAAGCAGAAGAAGAAGAAGAAGAAGTGATCCCAAAGTGGATGCCTTCCAAGATGAGGATGATGCGCAAGATGATGGTATCCGATCATCATCATCGACAACAACAGGAACAAGAGATTCCTATTATTGGAACTGACGATGACAACAACAATCACAACAGTAATACCACTGCTCCTACTGTTAGGGTTTGCTCTGATTGTCACACCACTAAGACTCCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCACTTTGCAATGCGTGCGGTATACGACAAAGAAAGGCGAGGCGTGCCGCCATGGCTGCTGCGGCGGCAAATGGAACCACACTGGCGGCGGCTGAGGTAAACAAGTTTGGTAGAAGCAAAGAGAAGCAGCTCAAGTCCAAAACTGGCAGTAGCGAGTTGATGAAAAAGAAGCGCAATAAGCTTGGAGCTGCTGGGAGAGGGAAGCAATCTCATCATCGTCATCGTCATCATCATCATGATTATTGTTTCGAGGATTTGAGATTAAGCTTATTAAGCAAGAATTTGGCTGTTCATCAAGTATTCCCTCAGGACGAGAAAGAAGCTGCGATCCTTCTCATGGCCTTATCCTATGGTCTTCTTCTTGGATGA 885 0.4486 MMPTTTTTLLDLNQDLTLSHDDDQEHQQQQQQQQPSSLSFPILLNPLPHQKVEKIDDANCSSGSRDHSEKPNHGSGIIKLIWKNKKRDEAEAEEEEEEVIPKWMPSKMRMMRKMMVSDHHHRQQQEQEIPIIGTDDDNNNHNSNTTAPTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAANGTTLAAAEVNKFGRSKEKQLKSKTGSSELMKKKRNKLGAAGRGKQSHHRHRHHHHDYCFEDLRLSLLSKNLAVHQVFPQDEKEAAILLMALSYGLLLG* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2777 294 ProSitePatterns GATA-type zinc finger domain. 153 178 IPR000679 GO:0006355|GO:0043565
Amo01g2777 294 MobiDBLite consensus disorder prediction 232 250 - -
Amo01g2777 294 ProSiteProfiles GATA-type zinc finger domain profile. 151 183 IPR000679 GO:0006355|GO:0043565
Amo01g2777 294 MobiDBLite consensus disorder prediction 211 250 - -
Amo01g2777 294 CDD ZnF_GATA 152 184 IPR000679 GO:0006355|GO:0043565
Amo01g2777 294 MobiDBLite consensus disorder prediction 28 42 - -
Amo01g2777 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 187 - -
Amo01g2777 294 Pfam GATA zinc finger 153 186 IPR000679 GO:0006355|GO:0043565
Amo01g2777 294 SMART GATA_3 147 199 IPR000679 GO:0006355|GO:0043565
Amo01g2777 294 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 10 292 - -
Amo01g2777 294 MobiDBLite consensus disorder prediction 20 42 - -
Amo01g2777 294 Gene3D - 144 233 IPR013088 GO:0006355|GO:0008270
Amo01g2777 294 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 10 292 - -
Amo01g2777 294 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2777 Amo-Chr1 98541305 98542848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2777 102 294 C2C2-Gata Transcription Factor Family AT4G26150 42.308 8.47e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo01g2777 GATA 3.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2777 - - aip:107642994 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2777 01 98541305 98542848 Amo13g2558 13 47296652 47299243 PCT
Amo13g2558 13 47296652 47299243 Amo01g2777 01 98541305 98542848 PCT