Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2764 ATGCCTCCAAGAATCCTGTTATGCGGCGACGTTTTTGGGCGGCTAAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCGGCGGGTCCATTCGACGCGCTTTTCTGCGTGGGCCAGTTCTTCCCGGACTCGCCGGAGCAGCTCGACGAGTTCATGGCCTACGTCGAAGGCAGCTCCCAAATTCCGATTCCTACTTACTTCATCGGCGACTATGGCGTCGGTGCCGCTAAAGTATTGCTGGCGGCTTCCAAGGACTCCGCCAATCGTGGTTTCAAGATGGACGGTCTCAGAGTCTGCGAAAACTTGTTCTGGTTGAAAGGCAGTGGCAATTTCTCCCTCTTTGGTTTATGTGTGGCCTATTTATCCGGGAGAAAATCACCGGAAGGGCAACAGTTTGGAACCTACAGTCAGGATGATGTTGATGCTTTGCGAGCAATAGCCGAGGAGCCCGGAATTGTCGACTTGTTCTTGACTAATGAATGGCCAACTGGGGTGACAAATAGAGCTTCAGATATTCCTGCTGGATTCTCGGATTCCATAGGCAGCGATTCAACCATATCGGAGTTAGTACAAGAGATTAAACCACGCTACCATATTGCAGGCACTAAAGGTATATACTATACCCGTGAACCATATTCCAATGTTGATGCTGTGCATGTGACTCGTTTCATAGGGCTTGCTTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCACTTTCTCCCACTCCAGCATCTACCATGTCTTCCACTGAGATTGCCATGAAAACCACAAATAGCACCTTATCACCATACACACTCATGGAAAAAAGTACATCTCCGAAGGATGTCTCTAAGAGATCTGGTGATGTGATGTCTGACGATCAATATTGGAGATATGATGTTTCTCAAAAGCGTCGAAGACATGATGCTGGGGAAGGGGAAAAAATATGTTTCAAATTTGTATCTTCTGGTTCTTGCCCACGTGGAGAGAAGTGCAATTTTCGACACGATGGGGATGCAAGGGAACAATATAAGAGAGGGGTTTGCTTTGATTTTTTGAATAAAGGAAAATGTGAAAGGGGTCCAGATTGCAGCTTTAAGCACAGTTTGCAGAATGAAGGCGATATGCCTCCTTCTAGGCGGCCTGGATCTGAAAATACTAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCTCACTTGATCATAAGCATTGGTGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAGTACCAGTTGAGCATATGCCAAGTACCTTGTCTCTGTCATCTGAATCTGAAGTTGAGCTCTGTCGGTTTCAGAACAGTCTTCAGAGGTATTGCAAGAGCCAGGGAAAGGAAGTCATCTTTTTTGAGTGGGTTTCCATACGCGGCACTCATGCAAATCTTCAGGCCATTCCTATTCCATCTTCCAAGGCAGTTATGGTTGAAAAGGCATTCAATTTAGCTGCACAAAAGATGGGATTTAAATTTGTGTCCAAGAGTTTTGATAGCATTTCTGATGGAAGAAAATTTCTGAAGACACAAGCTGATGGGGAGTCAAGTTTGTTCTATGCCGAAATCCCAGGAGGCACAATTCTGCTGCACCGTGTTGAGGAGAAAGTGAGATTCCCTGCCCAATTTGGACGTGAGGTCCTGGCAGGGTTGCTCAATATGGCAGACAATGCAGACTGGAGGAATCGCAAACATAACAAAGAGGAAGAAATGAAAATGTAG 1761 0.4549 MPPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALFCVGQFFPDSPEQLDEFMAYVEGSSQIPIPTYFIGDYGVGAAKVLLAASKDSANRGFKMDGLRVCENLFWLKGSGNFSLFGLCVAYLSGRKSPEGQQFGTYSQDDVDALRAIAEEPGIVDLFLTNEWPTGVTNRASDIPAGFSDSIGSDSTISELVQEIKPRYHIAGTKGIYYTREPYSNVDAVHVTRFIGLASVGNKDKQKFIHALSPTPASTMSSTEIAMKTTNSTLSPYTLMEKSTSPKDVSKRSGDVMSDDQYWRYDVSQKRRRHDAGEGEKICFKFVSSGSCPRGEKCNFRHDGDAREQYKRGVCFDFLNKGKCERGPDCSFKHSLQNEGDMPPSRRPGSENTRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPSTLSLSSESEVELCRFQNSLQRYCKSQGKEVIFFEWVSIRGTHANLQAIPIPSSKAVMVEKAFNLAAQKMGFKFVSKSFDSISDGRKFLKTQADGESSLFYAEIPGGTILLHRVEEKVRFPAQFGREVLAGLLNMADNADWRNRKHNKEEEMKM* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2764 586 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 2 585 IPR040194 -
Amo01g2764 586 SMART c3hfinal6 341 366 IPR000571 GO:0046872
Amo01g2764 586 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Amo01g2764 586 CDD MPP_CWF19_N 6 230 - -
Amo01g2764 586 Pfam Protein similar to CwfJ C-terminus 2 527 585 IPR006767 -
Amo01g2764 586 SUPERFAMILY CCCH zinc finger 339 367 IPR036855 GO:0046872
Amo01g2764 586 Pfam Protein similar to CwfJ C-terminus 1 382 495 IPR006768 -
Amo01g2764 586 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Amo01g2764 586 Gene3D - 296 366 - -
Amo01g2764 586 Gene3D - 382 503 IPR036265 -
Amo01g2764 586 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Amo01g2764 586 SUPERFAMILY CCCH zinc finger 306 333 IPR036855 GO:0046872
Amo01g2764 586 SUPERFAMILY HIT-like 386 459 IPR036265 -
Amo01g2764 586 PANTHER CWF19-LIKE PROTEIN 1 2 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2764 Amo-Chr1 98454889 98458594 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g2764 CwfJ_C_1 1.1e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2764 K24939 - gmx:100782106 1014.6