Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2748 ATGGATGGCGTATTCAACCTCCCTGAAGCCACCAGGAGCGACTTTCTCCGCTCTCTCATGCACACTTTTGGTTGCACATACATATGCCTCTGGCACTGCCACTCATCATCTAATAATTTATTGTTCTTGGATGGGATTTACAATAATGTAAGTAGCACCGTAGCTGAAGAAACGCTTTTTAATCTATATCAGCGTTTAACCTTTGATGCCGCCAATGACGAGTGGGTTCCTGGTGCGGCTTTCAGGAGGCACATGGCCTACTTAGAGCTTCAACAATTGGATCTTCTAAGACTTGCATCCGCCGTTATCCAAACACAATTCTATCTGGAAGCAAGGATTGAGACAGCTATCTTCATGGGGTGCAGCAAAGGGGAAATTGAGCTTGGTTTCGAGTTCGAATTTCACTCCTTATATGTGCAGATTGACATGAAAGCAGCAGTGAAGAGTTTATTCCCAGAAGATTTTTCAAGAGAGCAGATTCATCATCCAGCTTCATCGTCTTCATGTTCTTGCCCTAGCGATGAATTCTCATCCTTAGGGGGAGTATTGTTACCCGCACCAGAGGGTGAGCAAGAAGCAATCATAAGAGCAATCCTTCATGTTATTTCTTCTTCTTCTTCACCCGCCACCACTACTTCTCAACCACCACCATATAATAACAGTGCTTTCAGGGCATACCCTTCAACTACTTACAATTTAGTAACAAGTAGCAGCAGAAGGTTTAGTTTAATGAAGAGATCTATAGAATTCTCTAGAACCCTACATTTAATGAGAATTAGAGACCGCTTTCATTTTCAACGTCAACATCAACCGCCTCATCCCCTCATAATTGGTACCCAGAATGCTAATAATAATAAGCATCTTCATCACATCATATTAGAGAGAAGAAGACGCGAGAACGAAAACAAGTGTTTCCGGGAACTTAGGGCATTACTTCCTCCAGGAACTAAGAAACACAAATCTTCGGTTCTTATAGCGGCAAAGGAGGCATTGAAGTCTTTAATTGCTGAAATTGAAAAGCTTAACATAAGAAACCAGCAGTTAAAAACACTACTTGGTTCATCATCATCAAGCTATGGAAATGTTCATATCTCCTCATCACCATCATCATCAAATGAGAGATTGAACGTTGCGGTGTCGCATGTAGCGGGGTCGAGTTCATCGGAAGAGAGAATGGTGGATCTGGAAGTCGCTGTCAGAGGAGAAAGCTCGTCTCATCATCATCAATCGGATATTATGATTCGCATATTGGAATTCTTGAAAAGCCTTCAGAACCTCAGCTTCGTTTCCATGGCCGCAAATACTACTACTAATACACAAGGCACAACCATCACCCAAATCATCTTCAGAATAAGGATTCTTCAGGTATGTACCAAAATCACTTCATCACTGTTATGGAAATTTCTAAAATTATTAATTTTATGA 1425 0.4133 MDGVFNLPEATRSDFLRSLMHTFGCTYICLWHCHSSSNNLLFLDGIYNNVSSTVAEETLFNLYQRLTFDAANDEWVPGAAFRRHMAYLELQQLDLLRLASAVIQTQFYLEARIETAIFMGCSKGEIELGFEFEFHSLYVQIDMKAAVKSLFPEDFSREQIHHPASSSSCSCPSDEFSSLGGVLLPAPEGEQEAIIRAILHVISSSSSPATTTSQPPPYNNSAFRAYPSTTYNLVTSSSRRFSLMKRSIEFSRTLHLMRIRDRFHFQRQHQPPHPLIIGTQNANNNKHLHHIILERRRRENENKCFRELRALLPPGTKKHKSSVLIAAKEALKSLIAEIEKLNIRNQQLKTLLGSSSSSYGNVHISSSPSSSNERLNVAVSHVAGSSSSEERMVDLEVAVRGESSSHHHQSDIMIRILEFLKSLQNLSFVSMAANTTTNTQGTTITQIIFRIRILQVCTKITSSLLWKFLKLLIL* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2748 474 Coils Coil 324 351 - -
Amo01g2748 474 CDD bHLH_AtbHLH_like 290 341 IPR045239 -
Amo01g2748 474 Gene3D - 282 357 IPR036638 GO:0046983
Amo01g2748 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Amo01g2748 474 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 454 - -
Amo01g2748 474 Pfam Helix-loop-helix DNA-binding domain 288 334 IPR011598 GO:0046983
Amo01g2748 474 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 454 IPR044658 -
Amo01g2748 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 350 IPR036638 GO:0046983
Amo01g2748 474 SMART finulus 291 340 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2748 Amo-Chr1 98207480 98210116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2748 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 33.206 3.87e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g2748 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2748 - - ahf:112776694 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2748 01 98207480 98210116 Amo13g2569 13 48325517 48330636 PCT
Amo01g2748 01 98207480 98210116 Amo03g1219 03 28290568 28293155 PCT
Amo13g2569 13 48325517 48330636 Amo01g2748 01 98207480 98210116 PCT
Amo03g1219 03 28290568 28293155 Amo01g2748 01 98207480 98210116 PCT