LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g2744	ATGGTGGTGGTTGCTCACGGTGGAAGCGGTGGCGGCCAGGCTTGCTCACCGCCACAGTTCAACAAAGCTATTGCGGAAGAAAAACGAGTGGAAATGGTGAGAGTCAAATCAGAGCAAGTGACGTCTTCCTGCCACTTCTTGGAACAAAACGACGACGTTTCAAGCGACGAGTCTGATAAGAAGAGGAGCAACTCGGAAATGACGGAAGAAGAAGAGCCTCGCGTCAAAGAGGAGGCTGCTGATGACGGCGCCGTTAACTTGTCGTCATCTTCGTCGTCGGTGGAGTTGCCGAAACCGATGGAAGGGCTTAACGAGGCGGGTCCGCCACCGTTTCTAAGGAAGACGTATGAGATGGTGGAGGATCCGGAAACCGACCCGATTGTTTCGTGGAGCGAGAATCGCGATAGCTTCATCGTTTGGGAGTCTCACGAGTTCGCCAAAGTGCTTCTTCCAAAGTATTTCAAGCACAGCAACTTCTCCAGCTTCATTCGCCAGCTCAATACCTATGGCTTTAGGAAGGTTGATTCAGATCGTTGGGAGTTTGCAAACGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGAAGCAAGTACAACAAACTGCATCAAGGAGCTTTCATCGACCCAGCTAAGCCTTGCCTTGAGGCTGAAGTTGAGAAGCTGAAGGAGGACCAAAACATACTCAAACTTGAAATTCTGAAGCTGAGACAACAGCAAGAAAGTTCCCACATTCATATCTCAAGCGTTCAGGACCGGATTCAGAACGTCCAGACGAAGCAGTATCAGATGATATATTTCCTCACCAGAATGGCCAGAAAGCCAACCTTTATGGAACAGCTCCTCCAAAAGATTAAGAGGAAGAGGGAGCTCGATGGCACCGACATGCTCAAGAGGCGCAGATTGCTGGAACCAACGCCTAGTGTTGATTATAGATGCCAACAAGGTCATCATCAATTGTCTACATTGCAATCTGAACTTAATGGAATATTGTCTGAAAATGTGATGAACACTAGCAATAAGATAGAGCAAACTGTTCCTTCTCCTCTGGAAGGTGAGTTATGCAACAAGGTACAAGGCTTGAGAAGCTATGGCTTTTCAAGGGGTGGTGATGTACCTTCTGCTTATCATGCCATGACAGAGAACCTATTGGGGGAAAATAATGGTGGTGCTGATGAAGAACTTGATGTGAATGACTCAAATATTTATCTTGAGTTGGAGGATTTGATTACTAAGCCAACAGATTGGGTTGGTTCTGCATCTGCTGGTGGCTTAGTGGGGACAAACTAG	1302	0.4716	MVVVAHGGSGGGQACSPPQFNKAIAEEKRVEMVRVKSEQVTSSCHFLEQNDDVSSDESDKKRSNSEMTEEEEPRVKEEAADDGAVNLSSSSSSVELPKPMEGLNEAGPPPFLRKTYEMVEDPETDPIVSWSENRDSFIVWESHEFAKVLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGAFIDPAKPCLEAEVEKLKEDQNILKLEILKLRQQQESSHIHISSVQDRIQNVQTKQYQMIYFLTRMARKPTFMEQLLQKIKRKRELDGTDMLKRRRLLEPTPSVDYRCQQGHHQLSTLQSELNGILSENVMNTSNKIEQTVPSPLEGELCNKVQGLRSYGFSRGGDVPSAYHAMTENLLGENNGGADEELDVNDSNIYLELEDLITKPTDWVGSASAGGLVGTN*	434

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g2744	433	MobiDBLite	consensus disorder prediction	50	81	-	-
	Amo01g2744	433	SMART	hsfneu3	107	200	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo01g2744	433	MobiDBLite	consensus disorder prediction	34	109	-	-
	Amo01g2744	433	Pfam	HSF-type DNA-binding	111	200	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo01g2744	433	ProSitePatterns	HSF-type DNA-binding domain signature.	150	174	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo01g2744	433	SUPERFAMILY	"Winged helix" DNA-binding domain	107	200	IPR036390	-
	Amo01g2744	433	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	72	417	IPR027725	-
	Amo01g2744	433	Gene3D	-	104	201	IPR036388	-
	Amo01g2744	433	PRINTS	Heat shock factor (HSF) domain signature	111	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo01g2744	433	PRINTS	Heat shock factor (HSF) domain signature	149	161	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo01g2744	433	PRINTS	Heat shock factor (HSF) domain signature	162	174	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo01g2744	433	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-9	72	417	-	-
	Amo01g2744	433	Coils	Coil	216	243	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g2744	Amo-Chr1	98185124	98188084	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g2744	97	389	HSF	AT2G26150	43.522	2.26e-81	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Amo01g2744		HSF_DNA-bind	5.3e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g2744	K09419		-	gmx:100818430	483.026