Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2742 ATGGAACCTCGTGTTGGTAACAAGTTTCGGTTGGGTAGGAAGATCGGTAGCGGCTCCTTTGGGGAGATCTACTTAGGTACTAATATTCAGACTAACGAAGAAGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTTTACGAATCCAAATTATACAGAATTCTACAAGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGGGTGGAGGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTCAACTTTTGTAGTAGAAAGCTGTCACTAAAGACTGTTCTTATGCTTGCTGATCAAATGATCAACCGTGTCGAGTTCATCCATTCTAAATCATTTCTACATCGGGATATTAAACCGGATAATTTTCTGATGGGCCTAGGAAGGCGTGCGAATCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGTCGCAGAGATGATTTAGAGTCTCTTGGTTATGTTTTGATGTACTTCCTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCTGGAACAAAGAAACAAAAGTACGAGAAAATCAGTGAAAAAAAAGTTTCTACCTCAATTGAAGCACTATGTCGTGGCTATCCAACTGAATTTGCATCATACTTCCACTACTGCCGCTCATTAAGGTTTGATGATAAGCCAGATTATGCTTATCTCAAAAGGATATTTCGCGACCTCTTTATTCGTGAAGGTTTCCAGTTTGATTATGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAACTAGCCACTCCTCCGGCACGGGGCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCACCAGCTGTTATTACTAATCCCGATAGACAGACAGGTGGGGAAGAAGGACGGCCTTCTGGTTTGATTTCGGTGGATTCTTCAAGGCGGAGAATGTCGGGACCCATTTTAAATTCTTTATCAAGTGCCAACATCTTGGGCCAGTCAAGTGGATCATCAAGGCGGGTTGCTGTTTCTGGTAGCCGTGACGCATTTGGTGCTGAGTCAGATATTCGTGCTCGAAATACCGAAGCTAGCCCTGGAGCAGCACATAGAATTACAAGCGGGCAAAGAAGTTCACCAGTTGGATCTTCTGAACCCCAGAGAGTAACAGCATCCGGTAGGCATGGTTCTCACACCAGGAATTATGACAGCGCAGTCAGGGGCATGGAGAATTTGCAATTAGAGACTGATGAGAGGGCTCATTATTAG 1365 0.4308 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARGIGPSAGTSSGMPPAVITNPDRQTGGEEGRPSGLISVDSSRRRMSGPILNSLSSANILGQSSGSSRRVAVSGSRDAFGAESDIRARNTEASPGAAHRITSGQRSSPVGSSEPQRVTASGRHGSHTRNYDSAVRGMENLQLETDERAHY* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2742 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2742 454 PANTHER CASEIN KINASE-RELATED 357 433 - -
Amo01g2742 454 PANTHER CASEIN KINASE I-LIKE 357 433 - -
Amo01g2742 454 PANTHER CASEIN KINASE I-LIKE 1 311 - -
Amo01g2742 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Amo01g2742 454 MobiDBLite consensus disorder prediction 360 454 - -
Amo01g2742 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2742 454 MobiDBLite consensus disorder prediction 303 346 - -
Amo01g2742 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Amo01g2742 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2742 454 MobiDBLite consensus disorder prediction 399 431 - -
Amo01g2742 454 MobiDBLite consensus disorder prediction 360 375 - -
Amo01g2742 454 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Amo01g2742 454 PANTHER CASEIN KINASE-RELATED 1 311 - -
Amo01g2742 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Amo01g2742 454 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2742 Amo-Chr1 98166854 98171174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2742 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.14e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Amo01g2742 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2742 K02218 - gmx:100785851 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2742 01 98166854 98171174 Amo13g2663 13 53226990 53233477 PCT
Amo13g2663 13 53226990 53233477 Amo01g2742 01 98166854 98171174 PCT