Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2740 ATGTGCGGCGACGCAACCAACTGGGACGAAAATGCGTACAGGGAACGCCTCCTCAAGGAGAGGGAGATCCAAACCCGAACCGTTTTCCGTACGGCTTGGGCTCCTAGTCCCCGAAACCCTAATCCTCACTCTCTCGTCGTTGCTTCCAGCGACGGTTCTATCGCCTCCTACTCCATCCCTTCCTGCATCTCCAACCTCAAAAGTAATACCGATGCCAATGCGGCTAGATTATTGGCTGAACCAGATTGCTTCTTTCAAGGGCATGATGGACCTGCATATGATGTCAAATTCTATGGTGATGGTGAAGATGTACTGTTGTTAAGTTGTGGAGATGATGGGTGGATTCGAGGATGGAGGTGGAAGGAACTTGCAAACTCAAATAGTGCTGTTTCTTCTCAAGGAAACAATATCAAACCCATACTTGACCTGGCAAATCCTCAACACAAAGGTCCTTGGGGTGCACTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTAATTCTCAGGGAGGATCTGTTTTCTCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTTAAGGGGCACTTGGACTACTTGCACTGCATAGTTGCTCGCAACTCATCCAATCAGATCATAACTGGTTCAGAGGACAGGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCAAAGTGATTGATCCAGTAAAAGATTTGAACTTAATAGGATCTGTTTCATGGGTTGGCTGTGTTGCATTAGATGCAAGGACCATTGTCATCATTCCACAGGCTTGCAGTAGTGGACGGAATATATCCCTTTGGAACCTTCCTGCTTCAGAGTGCTTATCAAGGATTTCAACTCGTGCTTCTGTACAGGACATGCTATTTGACAGCAACCAAATTTTGGCAGTTGGTGCAGATCCTCTACTGAATCGCTTTGACATGAATGGTGCAATCCTTTCGCAAATACAGTGTGCTCCTGCATCAGCTTTCTCTGTCTCCTTACATCCTGCAGGGGTTGTGGCAGTTGGAGGTTATGGATGTCTTGTAGATGAGCTGTACCATTCTACGCGGACCAAAATGCCACAGATTTGTTGCTCCCAGCAAAAACATCTGAGACTCACAGCTGATGGACAGGACTTCTTCACATCTTATGATGAGGTGTACGATAGCTTTGATGCTATGGGTTTGCAAGAGAATCTCCTCAGAGGCATTTATGCCTATGGTTTTGAAAAGCCATCGGCTATTCAGCAAAGGGGAATAGTCCCATTCTGCAAGGGACTTGATGTTATTCAACAGGCCCAATCCGGAACTGGAAAAACTGCAACTTTCTGCTCTGGGATCTTGCAGCAACTTGACTACAGCCTGACTGAATGTCAGGCCTTGGTTTTAGCACCAACCCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGAGCGCTTGGTGATTATCTAGGTGTGAAGGTTCATGCCTGTGTGGGAGGCACCAGTGTTCGTGAAGACCAACGCATTCTAGCCAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGACGTGTCTTTGATATGCTGCGCAGACAGTCACTTCAGCCGGATCACATTAAAATGTTTGTGTTGGATGAGGCCGATGAAATGCTTTCAAGGGGTTTTAAAGACCAGATCTACGATATATTCCAGTTGCTGCCATCTAAGATTCAGGTAGGAGTTTTCTCTGCCACAATGCCACCTGAGGCCCTTGAAATTACTAGGAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGACGAGCTCACTTTGGAGGGTATAAAGCAGTTTTATGTCAATTGTGAGAGAGAGGAATGGAAGCTCGACACACTTTGTGATCTGTACGAGACATTAGCCATTACCCAGAGTGTCATTTTTGTCAACACCAGAAGGAAGGTCGATTGGTTGACTGACAAGATGCGAAGCCGAGACCACACGGTGTCAGCCACCCACGGAGACATGGACCAGAATACGAGGGACATCATTATGCGGGAATTCCGATCTGGGTCTTCCCGTGTTCTTATAACAACCGATCTTCTGGCACGTGGTATTGATGTTCAGCAAGTGTCTCTTGTTATAAACTATGATCTCCCTACACAGCCTGAGAACTATCTCCACCGTATTGGTCGTAGTGGTCGGTTTGGTAGGAAGGGTGTTGCCATCAACTTTGTCACGAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTTTATAATGTGCAAATCGAGGAGCTGCCTGCAAATATTGTTAGTCGCTTCAACATCTAA 2313 0.4604 MCGDATNWDENAYRERLLKEREIQTRTVFRTAWAPSPRNPNPHSLVVASSDGSIASYSIPSCISNLKSNTDANAARLLAEPDCFFQGHDGPAYDVKFYGDGEDVLLLSCGDDGWIRGWRWKELANSNSAVSSQGNNIKPILDLANPQHKGPWGALSPIPENNAIAVNSQGGSVFSASGDSCAYCWDVETGKVKMVFKGHLDYLHCIVARNSSNQIITGSEDRTARIWDCKSGKCIKVIDPVKDLNLIGSVSWVGCVALDARTIVIIPQACSSGRNISLWNLPASECLSRISTRASVQDMLFDSNQILAVGADPLLNRFDMNGAILSQIQCAPASAFSVSLHPAGVVAVGGYGCLVDELYHSTRTKMPQICCSQQKHLRLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNCEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVQIEELPANIVSRFNI* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2740 770 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 542 550 IPR000629 -
Amo01g2740 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 395 423 IPR014014 GO:0003724
Amo01g2740 770 Pfam DEAD/DEAH box helicase 420 581 IPR011545 GO:0003676|GO:0005524
Amo01g2740 770 Gene3D - 149 388 IPR015943 GO:0005515
Amo01g2740 770 Gene3D - 7 148 IPR015943 GO:0005515
Amo01g2740 770 SMART WD40_4 14 58 IPR001680 GO:0005515
Amo01g2740 770 SMART WD40_4 78 119 IPR001680 GO:0005515
Amo01g2740 770 SMART WD40_4 136 186 IPR001680 GO:0005515
Amo01g2740 770 SMART WD40_4 189 228 IPR001680 GO:0005515
Amo01g2740 770 SMART WD40_4 283 319 IPR001680 GO:0005515
Amo01g2740 770 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Amo01g2740 770 SMART ultradead3 414 611 IPR014001 -
Amo01g2740 770 CDD SF2_C_DEAD 608 738 - -
Amo01g2740 770 PANTHER RNA HELICASE 378 765 - -
Amo01g2740 770 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Amo01g2740 770 Gene3D - 604 766 IPR027417 -
Amo01g2740 770 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 378 765 - -
Amo01g2740 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 426 596 IPR014001 -
Amo01g2740 770 SMART helicmild6 648 729 IPR001650 -
Amo01g2740 770 Pfam Helicase conserved C-terminal domain 621 729 IPR001650 -
Amo01g2740 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 749 IPR027417 -
Amo01g2740 770 SUPERFAMILY WD40 repeat-like 39 355 IPR036322 GO:0005515
Amo01g2740 770 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Amo01g2740 770 Gene3D - 389 603 IPR027417 -
Amo01g2740 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 607 768 IPR001650 -
Amo01g2740 770 CDD DEADc_EIF4A 399 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2740 Amo-Chr1 98146876 98155698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2740 379 764 Eukaryotic Initiation Factors Gene Family AT1G72730 89.406 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2740 K03257 - qsu:112002178 1278.08