Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2719 ATGCTTACATGCATAGCACGTCCCAAGAAATCAGGCACGGGCAGCAACAACGAGTCTCTGAGTAAGACCGATGATTCCGATCCCAACAACAAAAACCAGTCCATGAAATCTCTCACTTCCCAGATAAAGGACATGGCGCTGAAGGCGTCGGGGGCGTACAAGCATTGCGCGCCGTGCACGGCGGGGCCGGCGGGGAGACTGGTGAGGAGAAACGGGGAGTCGTCGCCGGAGACGGACTCGGACAGGTTCAGGTGGTCGTACCGGAGGACAGGGAGCTCGACGAGAGGTTGGGGGAAGGAGATGGAGGCGAGGCTGAAGGGGATATCGTCGTCGAGTGGGGAAGGCACGCCGAACTCCGCCAGCGGACGGCGGTTGGAGCCGGTGGTTCTGTTCGTCGAAGAGAATGAACCAAAGGAGTGGGTGGCGAACGTGGAGCCCGGCGTTTTGATCACCTTCGTGTCGCTTCCACGTGGCGGCAACGATCTCAAGCGCATTCGTTTCAGTCGCGAGATGTTTAACAAATTGCAAGCTCAAAGGTGGTGGGCGGAGAACTATGACAGGGTGATGGAACTTTACAATGTTCAAAGGCTTAACCGTCAAGCATTCCCTCTTCCAACACCGCCAAGGTCCGAAGATGAGATCTCAAAGCTTGAATCAGCAGAGGAGAGCCCAGTAACACCACCACTAAGTAGGGAAAGACTAACTCGCAATTTGCACCGTCCAACAGGTATGGGAGTGGGATACTCTTCCTCGGATTCCTTCGATCATCAATCGATGCAATCCCGGAAGCTGCATGAATTAAATGGTGTTAACTCAACTCCAAAAGTCTCAACCATTAGTGCTGCCAAGACTGAGATATCGTCAATGGATGCTTCAATCAGAAGTAGCTCATCCAGAGAGGCTGATCAATCCGGCGATCTATCAATCAGCAATGCAACCGATTTGGATACCGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACCATCAGAGCATTGCCAGGTGGCAAAAAGGAGCTCAGACGAGTTAGGTTCAGGTGTTTCATCTTGTGTTGTGCAGCCGAGAAAAATTTGGGGAGATGCATGCTAGATTATGGTGGGAGGAGAATCGTGCTAGAATACATGAACAATACTTGTGAGAACTACTGCTGA 1155 0.5177 MLTCIARPKKSGTGSNNESLSKTDDSDPNNKNQSMKSLTSQIKDMALKASGAYKHCAPCTAGPAGRLVRRNGESSPETDSDRFRWSYRRTGSSTRGWGKEMEARLKGISSSSGEGTPNSASGRRLEPVVLFVEENEPKEWVANVEPGVLITFVSLPRGGNDLKRIRFSREMFNKLQAQRWWAENYDRVMELYNVQRLNRQAFPLPTPPRSEDEISKLESAEESPVTPPLSRERLTRNLHRPTGMGVGYSSSDSFDHQSMQSRKLHELNGVNSTPKVSTISAAKTEISSMDASIRSSSSREADQSGDLSISNATDLDTEWVEQDEPGVYITIRALPGGKKELRRVRFRCFILCCAAEKNLGRCMLDYGGRRIVLEYMNNTCENYC* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2719 384 ProSiteProfiles BRX domain profile. 317 374 IPR013591 -
Amo01g2719 384 MobiDBLite consensus disorder prediction 9 43 - -
Amo01g2719 384 Pfam Transcription factor BRX N-terminal domain 28 59 IPR027988 -
Amo01g2719 384 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 347 IPR044532 -
Amo01g2719 384 MobiDBLite consensus disorder prediction 287 308 - -
Amo01g2719 384 MobiDBLite consensus disorder prediction 1 43 - -
Amo01g2719 384 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 347 - -
Amo01g2719 384 MobiDBLite consensus disorder prediction 203 259 - -
Amo01g2719 384 MobiDBLite consensus disorder prediction 244 259 - -
Amo01g2719 384 ProSiteProfiles BRX domain profile. 138 193 IPR013591 -
Amo01g2719 384 Pfam Transcription factor regulating root and shoot growth via Pin3 138 192 IPR013591 -
Amo01g2719 384 Pfam Transcription factor regulating root and shoot growth via Pin3 317 346 IPR013591 -
Amo01g2719 384 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2719 Amo-Chr1 97992120 97995692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2719 1 346 Major Intrinsic Protein MIP AT1G31880 42.033 5.68e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2719 - - aip:107620530 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2719 01 97992120 97995692 Amo13g2687 13 54392016 54399807 PCT
Amo01g2719 01 97992120 97995692 Amo03g1274 03 29453833 29461779 PCT
Amo13g2687 13 54392016 54399807 Amo01g2719 01 97992120 97995692 PCT
Amo03g1274 03 29453833 29461779 Amo01g2719 01 97992120 97995692 PCT