Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2717 ATGGGTGATGTTCTAAGCCCCTACACACTTTCACCCCCACCTTCTTCATCATCTTCTTCAACAAAGTCCAACATTATCATGCTATATTATGGCCTGGCAGTTGTTGGAACCGCCGCAATAGCGCTAGCACTTTACAACTACTGCGTCATCAGAAGATGCAGCCGGCAACAACAACCGCATCCCGAAACAACAAGTGGGTTGGTCGAGGTTGTCGTGTCAAGAAGTATGAGCTTCGAGAATTCGCAAAGTAACTTGCTCTCAAGCTTCAAGTACAAGAAAGAAGAAGCAGAGAAAAAGGAGAAAGCCCAAAAAGAAGAAGAAGAAGAAGGTGATGATGATGGTTCTTATGATGAGTGCCCCGTTTGTTTATCGGTTTTCGAAGAAGGTGAAGAAGTGAGGAAGCTTCCGAGATGCAAGCACTCTTTTCATGCTCAGTGTATAGATATGTGGCTTCACTCTCATTTTGATTGCCCTGTTTGCCGTACACCGGTGGGGCCTTTCTTCCGCCGTTTTCCGCCGGAGACTAATAATAATAATAATTCCGTTGAGGAGTTGCCGGAATCCGGTGGTGTATGA 576 0.4566 MGDVLSPYTLSPPPSSSSSSTKSNIIMLYYGLAVVGTAAIALALYNYCVIRRCSRQQQPHPETTSGLVEVVVSRSMSFENSQSNLLSSFKYKKEEAEKKEKAQKEEEEEGDDDGSYDECPVCLSVFEEGEEVRKLPRCKHSFHAQCIDMWLHSHFDCPVCRTPVGPFFRRFPPETNNNNNSVEELPESGGV* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2717 191 SMART ring_2 119 160 IPR001841 -
Amo01g2717 191 SUPERFAMILY RING/U-box 118 173 - -
Amo01g2717 191 Pfam Ring finger domain 117 161 IPR001841 -
Amo01g2717 191 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 181 IPR044675 -
Amo01g2717 191 Coils Coil 86 112 - -
Amo01g2717 191 MobiDBLite consensus disorder prediction 1 21 - -
Amo01g2717 191 MobiDBLite consensus disorder prediction 96 115 - -
Amo01g2717 191 CDD RING-H2_EL5_like 118 161 - -
Amo01g2717 191 MobiDBLite consensus disorder prediction 172 191 - -
Amo01g2717 191 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Amo01g2717 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 166 IPR013083 -
Amo01g2717 191 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2717 Amo-Chr1 97971095 97971840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2717 32 164 C3H Transcription Factor Family AT5G17600 35.556 1.19e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2717 - - aprc:113852327 189.119