Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2714 ATGGCGGCGATTCAGATGAGCAAGAAGCGAAAGTTCGTAGCTGACGGAGTTTTCTTCGCGGAGCTGAATGAGGTTCTTACCAGAGAGCTTGCTGAGGATGGCTACTCCGGTGTTGAGGTTAGAGTTACCCCAATGCGTACCGAGATCATTATCAGAGCTACCAGAACCCAAGCAGTTCTTGGTGAGAAGGGAAGGAGAATCAGGGAGCTAACATCGGTGGTGCAGAAGAGATTTAAGTTTCCTGAGAACAGTGTTGAATTGTATGCTGAGAGGGTCAACAACAGGGGCTTGTGCGCTATTGCTCAAGCCGAATCCCTTCGGTACAAGCTTCTTGGTGGCCTTGCTGTAAGAAGGGCCTGCTATGGTGTTTTGAGGTTTGTTATGGAAAATGGTGCCAAGGGATGCGAGGTCATCGTTAGTGGCAAGTTGAGAGCTCAGCGAGCTAAATCCATGAAGTTCAAGGACGGGTACATGATTTCCTCAGGGCAACCAGTCAAGGACTACATTGATTCTGCTGTAAGACATGTACTCCTTAGGCAGGGTGTTCTTGGTATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAAGGGAAGCTTGGTCCCAAAACTCCCCTTCCTGATATTGTCACTATTCACCCACCGAAGGAGGAAGAAGAATACAACAGGATTCCTGCCGCAGCTGCCGTTCCAGCCTTGGCAAATGATATTGAGGCCCCTGCGGTCCCGGTTGCATGA 735 0.4925 MAAIQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAERVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMENGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPKTPLPDIVTIHPPKEEEEYNRIPAAAAVPALANDIEAPAVPVA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2714 244 Pfam Ribosomal protein S3, C-terminal domain 107 189 IPR001351 GO:0003735|GO:0006412
Amo01g2714 244 ProSiteProfiles Type-2 KH domain profile. 22 93 IPR004044 GO:0003723
Amo01g2714 244 TIGRFAM uS3_euk_arch: ribosomal protein uS3 9 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Amo01g2714 244 SUPERFAMILY Ribosomal protein S3 C-terminal domain 94 192 IPR036419 -
Amo01g2714 244 Gene3D - 1 93 IPR015946 -
Amo01g2714 244 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 11 100 IPR009019 GO:0003723
Amo01g2714 244 Pfam KH domain 21 94 IPR004044 GO:0003723
Amo01g2714 244 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 5 230 - -
Amo01g2714 244 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 5 230 - -
Amo01g2714 244 CDD 40S_S3_KH 16 96 - -
Amo01g2714 244 ProSitePatterns Ribosomal protein S3 signature. 148 184 IPR018280 -
Amo01g2714 244 Gene3D - 94 232 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2714 Amo-Chr1 97963160 97965221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2714 3 244 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 82.591 2.03e-147 409