Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2709 ATGAAAGCTTCTAAGATGGGGAGAAGCCCTTGTTGCTCAAAAGATGAGGACTTGAAAAGAGGTGCTTGGACTGCTGATGAAGACAAAATCCTCATAGACTACATTAGGGTCCATGGCCATGGAAGATGGAGAAACCTCCCCCAAAAAGCAGCTGGGAGGCTTCCGGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACCAACTTGAGTAAGAGGATGAAAGATAACAAGGATCACAACAAAGAAACAACCACCTCTTCTTCGAATCCAAAACACCCTCAAACAGAACCAACCCCACCTTTTAAGATTGACTTCCCTGTAATCCGAACAAAGGCTACAAAGTGCTCAAAGCAATTACTCATAAATAACAATGCACGACAATCAACACCGGTACCTTTGCTTCTGGATGCTTCTGCTGCTGCTGCTGCTGATGATTCTGAAGCCAACAACAATAAGAATATCGTTTCATCAATAGCAAGTAACCACAAAGAAGTACTCTCAAAGAACTACAATAGTAATGATGAGTTTTTGCCCTTCTTCAATGAAGATGATGACAAAGAAATACTCTCAAATACAGATTTGCTAATAGACGATTATTGTAATCTTACCGATGCTGATGGCGGCTTAAATGATCTTATCAATTCTGATGTCTCTGATCTCTGCTACGAGCTATTATTATCGCCTTATTCGGACCAACCCACCACCATCTTCTCCGATGACATCCTCAATCAATGGACACATGGCTATTTCGATGATGCTGATGATCACATTAATCATGATGATGACTCAATCATTGACCGTCATTGTCACCAGTCAAATGCCAAGGAGATAGAATAA 840 0.4107 MKASKMGRSPCCSKDEDLKRGAWTADEDKILIDYIRVHGHGRWRNLPQKAAGRLPGRTDNEIKNYWNTNLSKRMKDNKDHNKETTTSSSNPKHPQTEPTPPFKIDFPVIRTKATKCSKQLLINNNARQSTPVPLLLDASAAAAADDSEANNNKNIVSSIASNHKEVLSKNYNSNDEFLPFFNEDDDKEILSNTDLLIDDYCNLTDADGGLNDLINSDVSDLCYELLLSPYSDQPTTIFSDDILNQWTHGYFDDADDHINHDDDSIIDRHCHQSNAKEIE* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2709 279 PANTHER TRANSCRIPTION FACTOR TT2 51 224 - -
Amo01g2709 279 MobiDBLite consensus disorder prediction 47 104 - -
Amo01g2709 279 SUPERFAMILY Homeodomain-like 15 76 IPR009057 -
Amo01g2709 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 74 IPR017930 -
Amo01g2709 279 MobiDBLite consensus disorder prediction 72 86 - -
Amo01g2709 279 Gene3D - 17 75 - -
Amo01g2709 279 PANTHER TRANSCRIPTION FACTOR TT2 6 50 - -
Amo01g2709 279 Pfam Myb-like DNA-binding domain 20 70 IPR001005 -
Amo01g2709 279 ProSiteProfiles Myb-like domain profile. 15 70 IPR001005 -
Amo01g2709 279 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 51 224 - -
Amo01g2709 279 SMART sant 19 72 IPR001005 -
Amo01g2709 279 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 50 - -
Amo01g2709 279 CDD SANT 22 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2709 Amo-Chr1 97918859 97920158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2709 6 74 MYB Transcription Factor Family AT4G05100 40.171 3.47e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo01g2709 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2709 K09422 - gmx:100802704 137.117