Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2673 ATGGCTTCTTCTACGTCTTCTAAAGCCTCCCTTTTTCTCTTATCAACAATCTTATTCTTCTCAAATGCTTGTGCTATCAGCAACACCCCCAATGCAGAAAACCTCAATGCATTGAAATCCTTTTGCAGAACCACACCATACCCTGAAGTTTGCTTCAACTCATTGAAGCTATCAATCTCTATAACCATATCTCCAAACATACTCAACAACCTCCTTCAGTCTCTCCAAGTAGCTATATCAGAAGCCACAAAGCTATCTGATCTTTTCAACAATGCTGGAAACTCAAACAGCATCATAGAGAACAAAATAGGAGCAGTTCAAGACTGCAAGGAGCTCCACAAACTCACATTGTCTTCTCTGAAACGCTCTCTATCCGCAATCCGTTCGCAGAACTCGAAGGACTTGGTTGATGCAAGAACATACCTTAGTGCAGCGTTAACCAACAAAGAAACGTGTTTAGAAAGCATGGAGTCAGCTTCTGGTACCCTTAAGCCAACTCTTGTGGATTCTGTGACCAACACTTTCAAATATGTCAGCAACACTCTCTCAATGCTCCCTCGTAAGCCTGATATGAAGAAGAAGCAGAAGAAGAGCACTCCAAAGTGGTTTTTTTCAAAATCAGATGATGAAGGGTATGATCCTAGTGAAGTGATTGTTGTGGCTGCAGATGGGAGTGGGAACTTTAGTACTATCAATGAAGCTATTGACTTTGCTCCAAGTAACAGCTTTGACAGGACAGTGATATATGTGAAAGAAGGGTTATACGAGGAGAATGTGGAGATTCCAAGTCATAAGACCAATATTGTTTTGCTTGGAGATGGAAGAGATGCCACTGTCATCACTGGTAACAGAAGTTTTGTTGATGGCTGGACTACTTTTAGATCTGCCACTCTAGCTGTGTCTGGGGATGGTTTTCTGGCTCGAGACATAGCAATTGAGAACAAAGCGGGGCCAGAGAAGCATCAAGCAGTTGCACTGAGAGTTAATGCAGACTTGACTGCATTCTACAGATGTTCAATCTATGGCTATCAAGACACACTCTACACTCACTCCTTCAGACAATTCTACAGAGAAAGCGACATATATGGCACCATAGACTTCATATTCGGAAACGCGGCAGCGATCTTTCAAGGCTGCAACATTGTTTCACTAATGCCAATACCCGGCCAGTTTACGGTTATCACCGCGCAATCACGAAGTAGCCCTGATGAGGACACAGGGATCTCAATCCAGAACAGTTCAATTGTAGCAAGCACTGATTTGAGTTCAAATTCGACGATGGTCAAGAGTTACCTTGGGAGGCCATGGAGGGTGTATTCTCGCACTCTGTACATAGAGTCGTACATTGATAAGTTCATTGACCCGTTGGGATGGACAAAGTGGAACAATAATAATGATGGTGATACTGAAGGGCTTGAGACTCTGTATTATGGAGAGTATGAGAATTATGGGGGTGGTTCAGACACTCGTAACCGTGTTGATTGGCCAGGATTCCATTTGTTGGATTACAATGATGCTTATAACTTCACTGTTTCGGAGTTCATTGCAGGTGATGCTTGGCTTGGTTCTACTTCTTTTCCGTATGATGATGGGATTTGA 1599 0.429 MASSTSSKASLFLLSTILFFSNACAISNTPNAENLNALKSFCRTTPYPEVCFNSLKLSISITISPNILNNLLQSLQVAISEATKLSDLFNNAGNSNSIIENKIGAVQDCKELHKLTLSSLKRSLSAIRSQNSKDLVDARTYLSAALTNKETCLESMESASGTLKPTLVDSVTNTFKYVSNTLSMLPRKPDMKKKQKKSTPKWFFSKSDDEGYDPSEVIVVAADGSGNFSTINEAIDFAPSNSFDRTVIYVKEGLYEENVEIPSHKTNIVLLGDGRDATVITGNRSFVDGWTTFRSATLAVSGDGFLARDIAIENKAGPEKHQAVALRVNADLTAFYRCSIYGYQDTLYTHSFRQFYRESDIYGTIDFIFGNAAAIFQGCNIVSLMPIPGQFTVITAQSRSSPDEDTGISIQNSSIVASTDLSSNSTMVKSYLGRPWRVYSRTLYIESYIDKFIDPLGWTKWNNNNDGDTEGLETLYYGEYENYGGGSDTRNRVDWPGFHLLDYNDAYNFTVSEFIAGDAWLGSTSFPYDDGI* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2673 532 Gene3D - 213 532 IPR012334 -
Amo01g2673 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 185 IPR035513 -
Amo01g2673 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 187 IPR035513 -
Amo01g2673 532 PANTHER PECTINESTERASE 10 531 - -
Amo01g2673 532 PANTHER PECTINESTERASE 10 531 - -
Amo01g2673 532 CDD PMEI-like_3 40 184 - -
Amo01g2673 532 Pfam Pectinesterase 218 518 IPR000070 GO:0030599|GO:0042545
Amo01g2673 532 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 184 IPR006501 GO:0004857
Amo01g2673 532 SUPERFAMILY Pectin lyase-like 214 529 IPR011050 -
Amo01g2673 532 SMART PMEI_2 33 184 IPR006501 GO:0004857
Amo01g2673 532 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Amo01g2673 532 Pfam Plant invertase/pectin methylesterase inhibitor 37 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2673 Amo-Chr1 97538760 97540647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2673 40 532 Carbohydrate Esterase AT2G26440 65.631 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2673 - - gmx:102665651 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2673 01 97538760 97540647 Amo03g1624 03 44746944 44754797 PCT
Amo03g1624 03 44746944 44754797 Amo01g2673 01 97538760 97540647 PCT