Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2672 ATGGTTCTTTCTTCAACAAGAAAAGAGAAAAAGCCACCAATCATGGCACTCACCTTCTTGTTGATGCTTCTCCATGGACACTTCACTACTATGGCCTCTGCTTCTCGCACTCGTTTGGGAGGCTCAGCGTGCCTCAAGGTTTCACCTTCTGAGTTCGTCGGTGCTGTTAGGGAAGTTATTGGCCTCTTGGGAGATGTTGCTTCCATCTTGTCCAGGTTTAGCGGTGGCTTTGGAAATTTCCGTCTCGCCAACGCCATTCTTGACTGTCTTGATTTGTTGGACATGTCCTCCGACGAGCTTAACTGGTCTGTCTCCGCTACTCAAAACCCCAAAGGAAAAAACAACAGTACAGGAAACTTAGGATCCGATTTGAAGACATGGCTAAGTGCTGCCCTGGCAAATCCAGAGACATGCCTCGATGGATTCGAAGGCACAAGCAGTATCGTGAAAGGATTAGTCTCCAGCGGCCTTGGACAAGTGACATCGCTGGTGAAGAATCTCCTTGCAAAGGTTGATGTCCCCCACCATGATGTCTCCCACAGTGCCGGCGTGGACCAGTTTCCTTCGTGGGTGAAGCCGGGGGAGAGGAAGCTTCTGCAGGCAAATGGAGTGGCTGCGGATGTTGTGGTGGCTTTAGATGGAAGTGGAAAGTTCACAAGGGTGATGGATGCGATTATGGCTGCGCCGGATTATAGCATGAAGAGGTTTGTGATTTACGTGAAGAGAGGTGTTTATAATGAGAACGTGGAGATTAAGAAGAAGAAGTGGAATATCATGATGATCGGAGATGGTATCGGTGCCACTGTTATTACCGGCAACCGGAGTGTTGTTGACGGCTGGACAACTTTCCGATCGGCCACCTTTGCTGTAAGTGGAAGAGGATTCATAGCACGAGACATTACTTTTCAGAACACAGCAGGACCAGAGAAGCACCAGGCAGTGGCACTAAGATCCGATTCCGACCTCTCAGTCTTCTTCCGTTGCGGAATCTTGGGCTACCAAGACAGCCTCTACACTCACACAATGCGTCAATTCTTTAGAGAGTGCACAATCTCCGGCACAGTCGATTTCATCTTTGGCGATGCAACCGCAGTCTTCCAAAAATGCAATATACTTGTCAAGAAAGGGTTACAGAATCAAAAGAACACAATCACCGCACAAGGTAGAAAAGATCCTAATGAACCAACAGGATTCTCGTTACAATTCTGCAACGTAACTGCTGATTCTGACCTAGTTTCTTTTGTTAACACCACGGAATCTTTCTTGGGGAGGCCGTGGAAAACGTATTCAAGAACCATTTTTATGCAAAATTATATGAGCGAGATTATAAGGCCGCAAGGGTGGTTAGAGTGGAACGGTAACTTTGCGCTGGATACACTATATTATGCTGAGTATATGAATACTGGTGCCGGTGCTGGTGTAGCTAACAGAGTCAAATGGCCCGGATACCATGTTTTGAATAGCTCCAGTGAAGCTAGCAATTTTACTGTCTCACAGTTCATTCAAGGAAATTTATGGTTGCCTTCAACTGGTGTAGCATTCACAGCTGGATTAACGCTTTAA 1563 0.4677 MVLSSTRKEKKPPIMALTFLLMLLHGHFTTMASASRTRLGGSACLKVSPSEFVGAVREVIGLLGDVASILSRFSGGFGNFRLANAILDCLDLLDMSSDELNWSVSATQNPKGKNNSTGNLGSDLKTWLSAALANPETCLDGFEGTSSIVKGLVSSGLGQVTSLVKNLLAKVDVPHHDVSHSAGVDQFPSWVKPGERKLLQANGVAADVVVALDGSGKFTRVMDAIMAAPDYSMKRFVIYVKRGVYNENVEIKKKKWNIMMIGDGIGATVITGNRSVVDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFFRCGILGYQDSLYTHTMRQFFRECTISGTVDFIFGDATAVFQKCNILVKKGLQNQKNTITAQGRKDPNEPTGFSLQFCNVTADSDLVSFVNTTESFLGRPWKTYSRTIFMQNYMSEIIRPQGWLEWNGNFALDTLYYAEYMNTGAGAGVANRVKWPGYHVLNSSSEASNFTVSQFIQGNLWLPSTGVAFTAGLTL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2672 520 SUPERFAMILY Pectin lyase-like 204 517 IPR011050 -
Amo01g2672 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 169 IPR035513 -
Amo01g2672 520 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Amo01g2672 520 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Amo01g2672 520 SMART PMEI_2 35 170 IPR006501 GO:0004857
Amo01g2672 520 PANTHER PECTINESTERASE 47 518 - -
Amo01g2672 520 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 47 518 - -
Amo01g2672 520 Gene3D - 204 520 IPR012334 -
Amo01g2672 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 173 IPR035513 -
Amo01g2672 520 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Amo01g2672 520 CDD PMEI-like_4 17 169 - -
Amo01g2672 520 Pfam Plant invertase/pectin methylesterase inhibitor 84 169 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2672 Amo-Chr1 97531865 97534926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2672 16 518 Carbohydrate Esterase AT3G43270 64.410 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2672 K01051 - gmx:100814987 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2672 01 97531865 97534926 Amo13g2881 13 63359801 63363776 PCT
Amo01g2672 01 97531865 97534926 Amo03g1629 03 44826536 44842508 PCT
Amo13g2881 13 63359801 63363776 Amo01g2672 01 97531865 97534926 PCT
Amo03g1629 03 44826536 44842508 Amo01g2672 01 97531865 97534926 PCT