Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2666 ATGGGTTTCTATGCTGAGGACTCATCATCTGCATATGGTTGGACAATAGGTCAAGCCATATATGAAGCAGCTCTAATCATTGCAGTTCTGAGATGGGTCTTGTGCTTGGTTTTCAGGCTCATCAAAGATAGAGGAACAACACCTTCTTCTTCTTCTTGTACTCTTGTGTTGACCACGTTTCGTGAGATAATGGAGAGGCTTCCAGAGACAGAAGAAGATACATCTTGTGCAGTGTGCTTGAACCAGATGAAGATGGAAGATGAGGTTAGGGAACTAATGAACTGCTACCATGTCTTCCACAGAGAATGCATCGACAAATGGTTGGACAATGATGACAACAACCAGAACCCTACTTGCCCTCTTTGTAGAGCACCTTTGCTCACTCTTAATCATTGCAGTTATTCTTCATCAGAGAGCTCTTTTGGTTGTGTGCCACCATCTACTCAACCTAGTTGGGCTGTGGAGAGACTTCTCTACCTCTTCGGAGATGATCTTCTTCCTTGCTAG 507 0.4398 MGFYAEDSSSAYGWTIGQAIYEAALIIAVLRWVLCLVFRLIKDRGTTPSSSSCTLVLTTFREIMERLPETEEDTSCAVCLNQMKMEDEVRELMNCYHVFHRECIDKWLDNDDNNQNPTCPLCRAPLLTLNHCSYSSSESSFGCVPPSTQPSWAVERLLYLFGDDLLPC* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2666 168 ProSiteProfiles Zinc finger RING-type profile. 76 123 IPR001841 -
Amo01g2666 168 SUPERFAMILY RING/U-box 70 129 - -
Amo01g2666 168 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 167 - -
Amo01g2666 168 Pfam Ring finger domain 75 123 IPR001841 -
Amo01g2666 168 SMART ring_2 76 122 IPR001841 -
Amo01g2666 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 127 IPR013083 -
Amo01g2666 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 167 - -
Amo01g2666 168 SMART ringv_2 75 123 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2666 Amo-Chr1 97443681 97444698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2666 1 165 C3H Transcription Factor Family AT5G20885 46.774 3.37e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2666 K16281 - gmx:111138523 223.016