Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo01g2665 | ATGTCAGCCACAGAACCACCTTCATTCCAAGAAGCAGCGCGATGTGTTGTCTGCAATTGCAGTTTCAACACTTTCAGGAGACGGCATCACTGTCGATCCTGTGGGAGAACTTTGTGCAATGAACATTCATCAAATCAAATGGCTTTACCTCAATTTGGCATTTACTCAAGTGTCCGAGTATGTGCTGATTGTTTCAACAATTCAAGGTCTGGGAATGGTGTAAGACAGGCTTCTTCGGGTGGAGTGAACAGCATAACGGATACAATTTCTAAAATAGATATCGATGCCAATGATGATCCAAAAGCCATTCCTACTGCAGGGAGTACACTTGCATTGGGCATTAAAGAGTGTATGTGTGGAATGCCTCTTTGCATTTGTGAGTCTGAGGCTCCCACACCTTCCTCTTCTGCACAACCTCGGCAGATATCCTCTCCGGCTATTACCTCTGAATCAAATCCTAAACCTAAGAAGGCAGATACTGCTCCAAAAAATAGAAGTTCCAGTTCATCTAGCAAGTTTAGTTCTGCTTTTGGTCATGTAACCAATGGGACATCGGAGAGAAGCCAGACCGATTATGGAGCCAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACGTAGCTGCTGTCAAGAAACTTCTTGATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGGCTATCGTTACTGCATTTGGCTGCGGTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGTGCGAGCCTGGAGTACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACCTTACAGTACAAAATGCGAAAGAAGATAGAAGACGGTGGAACAATGAACCAAAGCATTTGA | 873 | 0.4364 | MSATEPPSFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGIYSSVRVCADCFNNSRSGNGVRQASSGGVNSITDTISKIDIDANDDPKAIPTAGSTLALGIKECMCGMPLCICESEAPTPSSSAQPRQISSPAITSESNPKPKKADTAPKNRSSSSSSKFSSAFGHVTNGTSERSQTDYGANGEGLREAIKNGDVAAVKKLLDEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEDGGTMNQSI* | 291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo01g2665 | 290 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 3 | 283 | - | - | |
| Amo01g2665 | 290 | SUPERFAMILY | Ankyrin repeat | 199 | 270 | IPR036770 | - | |
| Amo01g2665 | 290 | SMART | ANK_2a | 194 | 223 | IPR002110 | GO:0005515 | |
| Amo01g2665 | 290 | SMART | ANK_2a | 227 | 256 | IPR002110 | GO:0005515 | |
| Amo01g2665 | 290 | Pfam | Ankyrin repeats (3 copies) | 201 | 268 | IPR002110 | GO:0005515 | |
| Amo01g2665 | 290 | MobiDBLite | consensus disorder prediction | 130 | 194 | - | - | |
| Amo01g2665 | 290 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 70 | IPR013083 | - | |
| Amo01g2665 | 290 | ProSiteProfiles | Ankyrin repeat profile. | 227 | 259 | IPR002110 | GO:0005515 | |
| Amo01g2665 | 290 | MobiDBLite | consensus disorder prediction | 162 | 192 | - | - | |
| Amo01g2665 | 290 | MobiDBLite | consensus disorder prediction | 130 | 155 | - | - | |
| Amo01g2665 | 290 | Pfam | FYVE zinc finger | 10 | 67 | IPR000306 | GO:0046872 | |
| Amo01g2665 | 290 | Gene3D | - | 177 | 275 | IPR036770 | - | |
| Amo01g2665 | 290 | SUPERFAMILY | FYVE/PHD zinc finger | 11 | 70 | IPR011011 | - | |
| Amo01g2665 | 290 | ProSiteProfiles | Ankyrin repeat profile. | 194 | 226 | IPR002110 | GO:0005515 | |
| Amo01g2665 | 290 | CDD | FYVE_scVPS27p_like | 9 | 65 | - | - | |
| Amo01g2665 | 290 | ProSiteProfiles | Ankyrin repeat region circular profile. | 227 | 258 | - | - | |
| Amo01g2665 | 290 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 9 | 69 | IPR017455 | - | |
| Amo01g2665 | 290 | SMART | fyve_4 | 1 | 70 | IPR000306 | GO:0046872 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo01g2665 | 205 | 265 | MAP Kinase Kinase Kinase | AT4G18950 | 40.984 | 2.79e-09 | 55.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo01g2665 | - | - | ahf:112696126 | 569.696 |