Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2654 ATGGCACTAAGGGGTGGTGGGAGAAGGATAACAATGGCAAAATTTATTCTTGTTTTGGCCACCTTCATTTTCACAGTGATGAATACTGCATATGCTTTCTCAGCTTCCGGTTGGACCAATGCCCATGCCACCTTCTATGGGGGTAGTGATGCCTCAGGAACTATGGGAGGAGCATGTGGGTATGGGAATCTGTATGCAACTGGGTATGGGACGAGAACTGCGGCTTTGAGCACAGCCTTGTTCAATGATGGAGCCTCATGCGGAGAATGCTACAAGATCATCTGCGATTACAAAGCAGACTCAAGATGGTGCATCAAAGGAAGATCAGTCACCATAACCGCCACAAACTTTTGCCCTCCTAACTTTGATCTTCCCAATAACAATGGAGGGTGGTGCAACCCACCTCTGAAGCACTTTGATATGGCTCAACCAGCATGGGAAAAGATTGGCATCTACAGAGGAGGCATCGTCCCCGTCCTGTTCCAAAGATTCAGCATAAATGGGAGAGACTACTTTGAGTTAGTGTTGATAAGCAATGTGGGAGGTGCTGGATCCATCCAATCAGTGTCCATAAAGGGATCAAAAAGTGGGTGGATGGCTATGTCAAGAAACTGGGGTGCTAACTGGCAATCCAATGCATATTTGAATGGCCAATCTTTGTCATTCAGGGTCACTACTACTGATGGAGAAACTAAGCTTTTCAATGACATTGTTCCATCTAACTGGGGATTTGGCCAAACTTTCTCTAGCCCTGTTCAGTTCTCATAA 768 0.4596 MALRGGGRRITMAKFILVLATFIFTVMNTAYAFSASGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGRSVTITATNFCPPNFDLPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRFSINGRDYFELVLISNVGGAGSIQSVSIKGSKSGWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGETKLFNDIVPSNWGFGQTFSSPVQFS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2654 255 Gene3D - 24 163 IPR036908 -
Amo01g2654 255 PRINTS Expansin signature 97 108 IPR002963 GO:0009664
Amo01g2654 255 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Amo01g2654 255 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Amo01g2654 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Amo01g2654 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Amo01g2654 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Amo01g2654 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Amo01g2654 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Amo01g2654 255 SUPERFAMILY PHL pollen allergen 163 250 IPR036749 -
Amo01g2654 255 Gene3D - 164 255 IPR036749 -
Amo01g2654 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 163 IPR007112 -
Amo01g2654 255 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Amo01g2654 255 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Amo01g2654 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Amo01g2654 255 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Amo01g2654 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Amo01g2654 255 PANTHER EXPANSIN 13 254 - -
Amo01g2654 255 Pfam Expansin C-terminal domain 163 239 IPR007117 -
Amo01g2654 255 SMART dpbb_1 73 161 IPR007112 -
Amo01g2654 255 Pfam Lytic transglycolase 73 160 IPR009009 -
Amo01g2654 255 PANTHER EXPANSIN-A15 13 254 IPR002963 GO:0009664
Amo01g2654 255 SUPERFAMILY Barwin-like endoglucanases 37 179 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2654 Amo-Chr1 97302314 97303256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2654 73 254 Expansin Gene Family AT1G20190 79.167 6.62e-113 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2654 - - gmx:548040 456.447