Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2650 ATGGCATCATCTGCTTCCAGTTCAAGGCACCCTGTTCCCCAATCTCGCAAGCAAAAGGCCCTCGGTCTCCTATGCACTAATTTCCTGAGCTTGTATAATAGACATGACGTCCAATTCATCGGCCTCGACGATGCCGCCGCCCGATTAGGTGTTGAGAGAAGACGGATCTATGATATCGTCAATATTCTCGAGAGCATCGGGGTGCTTGCAAGAAAGGCCAAAAATCAATATACATGGAAAGGCTTTGGAGCAATTCCTGGAGCTTTTCATGAACTCAAGGAAGAGGGATTACGGGAGAATACATATGCTTTTGAAGGCGGAAATGACAACCTAAAAGGGTCTGATGACGAGGATGATGAAGAAGCATTTTCTAATACTGGGACCGGGAGTCAAAATGACAAGTCCAATTCCAATTCAAATTCAAATTCTACAACACTTTCCAAATCTCTCAAAAACGATAATCGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAACTTTGTAAAGCTATTTGTTTGCTCTAATATAGAAATGATCTCCCTTGACGAGGCTGCGAATTTGTTGCTTGGAGATGGCCACAGTTCATCATTAATGAGAACAAAAGTAAGACGCCTATATGATATTGCAAATGTGTTGTCCTCCATGAACCTTATCGAGAAGACCCACACCACAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAGAGGGAAGGCACCTAACGAGTCCATTCAAAATTGTTCAAATCCAAACGAGTCTAGGAAAAGAGCGTTTGGAACTGATGTCACAAACATCAGTTTTGAGAGGAACATAGTGGAATTAGGGGACTTTGCCTCTAAGAAGCTCAAAAAATTGGACAATGGTAGTGGCATAGGTCAAGCAAATAGTTTTCAACAAGCTTCAAAGGGTTTTCAGTTTGGTCCTTTTGCACCTTCTTATGTGCCCAAAGTTGGAACACCCGAGAATAATAGTGTGAAGAAGGTTCATGATTGGGACAGTCTAGCAATTAAACATCGTCCACAATACCAAAACCAAGCTTTAAGAGAACTATTCTCCCATTACATGGAAGCATGGAAATCGTGGTATTCAGAAGTTGTTGGGAAGAATCCAATGCAGATTTAA 1125 0.4213 MASSASSSRHPVPQSRKQKALGLLCTNFLSLYNRHDVQFIGLDDAAARLGVERRRIYDIVNILESIGVLARKAKNQYTWKGFGAIPGAFHELKEEGLRENTYAFEGGNDNLKGSDDEDDEEAFSNTGTGSQNDKSNSNSNSNSTTLSKSLKNDNRREKSLALLTQNFVKLFVCSNIEMISLDEAANLLLGDGHSSSLMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKAPNESIQNCSNPNESRKRAFGTDVTNISFERNIVELGDFASKKLKKLDNGSGIGQANSFQQASKGFQFGPFAPSYVPKVGTPENNSVKKVHDWDSLAIKHRPQYQNQALRELFSHYMEAWKSWYSEVVGKNPMQI* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2650 374 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 6 366 - -
Amo01g2650 374 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Amo01g2650 374 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Amo01g2650 374 SUPERFAMILY "Winged helix" DNA-binding domain 157 236 IPR036390 -
Amo01g2650 374 MobiDBLite consensus disorder prediction 103 152 - -
Amo01g2650 374 MobiDBLite consensus disorder prediction 124 149 - -
Amo01g2650 374 PANTHER TRANSCRIPTION FACTOR E2F 6 366 IPR015633 GO:0000978|GO:0006357
Amo01g2650 374 Gene3D - 11 84 IPR036388 -
Amo01g2650 374 Gene3D - 150 237 IPR036388 -
Amo01g2650 374 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Amo01g2650 374 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Amo01g2650 374 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2650 Amo-Chr1 96938961 96942100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2650 15 372 E2F-DP Transcription Factor Family AT3G48160 55.526 4.04e-129 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo01g2650 E2F_TDP 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2650 K09391 - gmx:100806151 503.827