Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2644 TCACGGAGGAAGAAGAAGGGAGAGAAAAAAAAAAAAAAAAAGAAGCAGAAGGAGATGGCATCATCAAGCTCGTACAATTCACCTTGCGCTGCCTGCAAATTCTTGAGGAGGAAGTGCATGCCAGGGTGTATCTTTGCGCCTTATTTTCCACCCGAAGAGCCTCAAAAGTTTGCAAACGTGCACAAGATCTTCGGTGCAAGCAATGTTACCAAGCTCCTCAACGAGCTTCTGCCTCATCAAAGGGAGGATGCGGTCAACTCCCTCGCTTATGAGGCAGAAGCTCGCGTGAGAGATCCTGTTTACGGCTGCGTTGGCGCCATATCATTCCTCCAAAGACAAGTCCAAAGACTTCAGAAAGAACTTGATGCCGCCAACGCCGATCTTCTCCGCTATTCCTTTACTGACATCGCTCCGACGCCGGCTCTTTCTATGCCTCCCGGACTAACCAATGCTACTTCCCTTCAACAAATTCCCCAAAGGTTTGGGGCAAGATTTGATAACGAAGGAAGTGGATTCTATAACAATAATCGCCAATATTCACCTAATATTTATTCTTACCCATACTCTCTTCCATGGACCGATACCTCTTCCAAGGATATCAGCGATGGGGGCGGGTTAGGTGACGGCGATGGGAGAGGAGGTAATTTGTGA 651 0.4777 SRRKKKGEKKKKKKKQKEMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSFTDIAPTPALSMPPGLTNATSLQQIPQRFGARFDNEGSGFYNNNRQYSPNIYSYPYSLPWTDTSSKDISDGGGLGDGDGRGGNL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2644 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 204 - -
Amo01g2644 216 MobiDBLite consensus disorder prediction 1 26 - -
Amo01g2644 216 ProSiteProfiles LOB domain profile. 27 128 IPR004883 -
Amo01g2644 216 MobiDBLite consensus disorder prediction 1 17 - -
Amo01g2644 216 Coils Coil 107 127 - -
Amo01g2644 216 Pfam Lateral organ boundaries (LOB) domain 28 125 IPR004883 -
Amo01g2644 216 PANTHER ELONGATED PETIOLULE 1 19 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2644 Amo-Chr1 95970511 95972309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2644 19 137 AS2 family AT5G63090 90.833 4.63e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo01g2644 LOB 4.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2644 - - ahf:112722314 381.719