Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2635 ATGGCGGTTTTACCTGGAAGTTCCTCCAGCTTAGAATTGACCATATCTGTGCCAGGCTTTGCCTCTTCACCACCTCTACTTCCATCATCATCTGTGAAAGAATTGGACATAAACCAATTACCATCAGAAGAAGAATGGATTATAGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGAACCTCCACGCAAGAAACTTCGTCTCACAAAAGAACAGTCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACTTTAAACCCTAAGCAGAAAGAGTCATTGGCAATGCAACTGAACCTAAGAGCAAGGCAAGTGGAGGTTTGGTTTCAAAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGAGGTGGTTTGGATCGTTGACGGAGCAGAAGCGAAGGTTACAGAGGGAAGTGGAAGAGCTGAGAGCCATGAAGGTGGGCCCACCAACCGTGCTCTCTCCTCACACAAGCCAGCCACTCCCAGCTTCAAGCCTAACCATGTGTCCCCGTTGCCAGCGTGTCACCTCAACTGCCACATTATTATCTTCCCCTAAATCGCATCAACCTCCAGCGGCTTCTCCATGA 615 0.4846 MAVLPGSSSSLELTISVPGFASSPPLLPSSSVKELDINQLPSEEEWIIASNMEDEEESSNGEPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQKRRLQREVEELRAMKVGPPTVLSPHTSQPLPASSLTMCPRCQRVTSTATLLSSPKSHQPPAASP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2635 204 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Amo01g2635 204 Coils Coil 134 154 - -
Amo01g2635 204 PANTHER - 1 190 - -
Amo01g2635 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 190 - -
Amo01g2635 204 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Amo01g2635 204 SMART HOX_1 63 125 IPR001356 GO:0003677
Amo01g2635 204 Gene3D - 57 129 - -
Amo01g2635 204 CDD homeodomain 64 122 IPR001356 GO:0003677
Amo01g2635 204 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Amo01g2635 204 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Amo01g2635 204 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Amo01g2635 204 SUPERFAMILY Homeodomain-like 50 122 IPR009057 -
Amo01g2635 204 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2635 Amo-Chr1 95413026 95418686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2635 32 188 Homeobox Transcription Factor Family AT1G70920 62.112 6.29e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo01g2635 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2635 K09338 - gmx:100775341 336.265