Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2586 ATGGCAACATTTGGAGGCACAACACAGAAGTGCAGAGCATGTGAAAAGAAGGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTCTACCATAAATCTTGCTTCAGATGTCACCATTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCATTTGAGGGAGTTCTATACTGCAAGCCTCATTTTGATCAACTTTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGAGTTCCAAAAACTGCAAGGATTGAAAGATCTGCTGATCAGGTACAAAGCAATAGCAAGGTTTCAAGATTGTTTGCAGGGACTCAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTATACCCTATTGAAAAGGTGGGTGTTGATGGGAAATGTTACCATAAGGGATGCTTCAGGTGCAGCCATGGAGGGTGTGTAATAAGCCCATCAAATTATGTGGCCCATGAACATCGCCTTTATTGCAAGCACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCACCCAATTTGACATTCATAGCAATGGCCATGGGATTTCTGAGAATGATAACACAAATTCTTCTTATGAGTAG 588 0.4201 MATFGGTTQKCRACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGVPKTARIERSADQVQSNSKVSRLFAGTQEKCVGCKKTVYPIEKVGVDGKCYHKGCFRCSHGGCVISPSNYVAHEHRLYCKHHHTQLFKQKGNFTQFDIHSNGHGISENDNTNSSYE* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2586 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Amo01g2586 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Amo01g2586 195 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 184 - -
Amo01g2586 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Amo01g2586 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Amo01g2586 195 Pfam LIM domain 110 165 IPR001781 -
Amo01g2586 195 Pfam LIM domain 11 65 IPR001781 -
Amo01g2586 195 Gene3D Cysteine Rich Protein 104 174 - -
Amo01g2586 195 Gene3D Cysteine Rich Protein 6 75 - -
Amo01g2586 195 SMART lim_4 10 62 IPR001781 -
Amo01g2586 195 SMART lim_4 109 161 IPR001781 -
Amo01g2586 195 CDD LIM1_SF3 7 68 - -
Amo01g2586 195 CDD LIM2_SF3 110 170 - -
Amo01g2586 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Amo01g2586 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Amo01g2586 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Amo01g2586 195 PANTHER OS06G0237300 PROTEIN 1 184 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2586 Amo-Chr1 92000713 92001883 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Amo01g2586 LIM 3.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2586 K09377 - gmx:100792627 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2586 01 92000713 92001883 Amo11g2044 11 110827760 110829298 hybridization