Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2562 ATGACCATCTGTTGGTGCTTACCAAAGATTATATTATATATACAAGTTTTCATCATTGTTGATGTGATTTCGATCACTCTTCTAATGGTTCAAAAACCACTGCAAAACAAAGAAACTAACCCAAGAATAATGGTTGTGATGAACCCAATCTTGGCACTCTCCATTATTACCACCATTTTATTCTTGTCTCCAATGGCTTATTCAGAGAACGAAGCGGTGAAGAGCGCATTGGTGAGATTCATGGACAATCTTGCACCATGGAATAATAATTCAGAGAGAGAAGCAGGAAGGTACTGGGGATGGAACCTTGACACAGATCCATGCGCAGATAACTGGAAAGGTGTGAGTTGTTCCTCAGATGGAAGTGTGAAAGCCATTGTTCTTGATGATTCAAACCTGAGTGGAACCCTAGACGCCACCTCTCTCTGCATGGCGAAATCTCTTCAAATTCTGAGCCTCAAGAGGAACAACTTGCAGGGATCAGTGCCCGAAGCTATCGGAAACTGTAAGTATTTGACCCGTTTGTTCCTCAGCGATAACAACTTCTCCGGTGATCTTCCGACTTCTCTTCGACATTTATGCAGCTTGAGGTGGCTTGAAGTTGCCAGAAACAAGTTTACGGGTCCCATTTCCGATAAGATACCTGCCTCAGTCTTGATATCCTTTCTCGGTGAGAATAACAAGTTCACTGGGGAGGTACCTGATTTTGACTTCATGAAACTCATTCGATTCAACGTCTCCAACAACAACTTGAAGGGGCAGATTCCTGACGTGAGAAACAAGTTTGGTGTGGAAAGCTTTTCTGGAAATCCTGACTTGTGTGGATCGCCGCTTCCAGCGGCATGTCCACCTAGTCCCTCACCAAGGAAAGAAAAAAGATTATTCATCACTGACGGCGTGGCGATTTACTCTGGCTACATCATTCTTGGCATCACCGTGGTGGCATTCTTTGTGTACAAGCTAGTGAGGAAATCCATGAACAAAGTGGAAGCATCCAAGGCTCTCAACAAGAAGGAATGCCCAAGGCATCGATTAACTCGAAAGGATCCTGCAGGGGGCAATAATGGTGAAAAGAGCAGGGAGGATTCTTCTGAGAGCAAGGGTAGTGGTCGTGGCGGCGGCCGTGGCAGCGTTGAGATGAGATCAGAGCCATCGATAGCGTCACTTGAGAGTGGAATAACATTGAGCACATCAACGCTGGTAGTTCTGTCAAGCAGGGTATCAAAGGCGCTGAGATTTGAGGACTTGCTGAGAGCACCAGCTGAGTTGATTGGGAGAGGGATGCATGGGAGCCTCTACAAGGTGATGCTGGACAACGGTGTGTTCTTGGCTGTGAAGAGAATCAAGGATTGGGGAATCTCCGAAAGTGATTTTCAGAGGAGAATTGGGAAAGTTAGCCAAGTCAACCATCCATTTGTGTTGCCACCTCTTGCTTACTATTGTTCCCGCCAAGAGAAGCTTCTTGCATATGAGTACATGGACAATGGGAGTCTCTTCAACATGCTCTATAAAGTTGGATCACAAAATGGAAAACCCTTTGAGTGGGGAAGCAGACTAAACATTGCTGCAAAAATAGCAGAAACTTTAGCTTATATGCATGAAGAGCTACGAGAAAGTGGAATAGCACACGGAAACTTAAAATCAAGCAACATTTTATTCAACAACAACATGGAACCATTAATAAGCGAATATGGGCTAATGGTAATTGAACACCAAGCTCTGAGATCACTCTCTCACAGCAAGAGTGTGAGGAACAGGGTTCTAACTGCTGCACATGCATATAGCACCTTCAAAGTTGATGTATACGCCTTTGGGGTGATACTCTTGGAGCTTCTCACAGGGAAAGTGGTTCAGAATCAAGGGGTTTTTGATTTCGTTAAGTGGGTTAATTCTGTGGTTAGAGAGGAGTGGAGTGTTGAAGTGTTTGATAAGAACTTGGTGTCAGAAGGTGCGAGTGGAGAGAGGATGATGAACTTGTTGCAGGTTGCATTGAAATGCATCAATCCTTCTCCTGCTGATAGACCAAGCATGAGTGAAGTTGCATTGGCCATAGTTGCATTGAAAGAGGAGGAAGAAAGATCTTTAACATAG 2091 0.4448 MTICWCLPKIILYIQVFIIVDVISITLLMVQKPLQNKETNPRIMVVMNPILALSIITTILFLSPMAYSENEAVKSALVRFMDNLAPWNNNSEREAGRYWGWNLDTDPCADNWKGVSCSSDGSVKAIVLDDSNLSGTLDATSLCMAKSLQILSLKRNNLQGSVPEAIGNCKYLTRLFLSDNNFSGDLPTSLRHLCSLRWLEVARNKFTGPISDKIPASVLISFLGENNKFTGEVPDFDFMKLIRFNVSNNNLKGQIPDVRNKFGVESFSGNPDLCGSPLPAACPPSPSPRKEKRLFITDGVAIYSGYIILGITVVAFFVYKLVRKSMNKVEASKALNKKECPRHRLTRKDPAGGNNGEKSREDSSESKGSGRGGGRGSVEMRSEPSIASLESGITLSTSTLVVLSSRVSKALRFEDLLRAPAELIGRGMHGSLYKVMLDNGVFLAVKRIKDWGISESDFQRRIGKVSQVNHPFVLPPLAYYCSRQEKLLAYEYMDNGSLFNMLYKVGSQNGKPFEWGSRLNIAAKIAETLAYMHEELRESGIAHGNLKSSNILFNNNMEPLISEYGLMVIEHQALRSLSHSKSVRNRVLTAAHAYSTFKVDVYAFGVILLELLTGKVVQNQGVFDFVKWVNSVVREEWSVEVFDKNLVSEGASGERMMNLLQVALKCINPSPADRPSMSEVALAIVALKEEEERSLT* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2562 696 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Amo01g2562 696 Gene3D Phosphorylase Kinase; domain 1 394 492 - -
Amo01g2562 696 SUPERFAMILY Protein kinase-like (PK-like) 422 681 IPR011009 -
Amo01g2562 696 MobiDBLite consensus disorder prediction 332 381 - -
Amo01g2562 696 ProSiteProfiles Protein kinase domain profile. 418 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2562 696 PANTHER LRR RECEPTOR-LIKE KINASE 54 695 - -
Amo01g2562 696 ProSitePatterns Protein kinases ATP-binding region signature. 424 446 IPR017441 GO:0005524
Amo01g2562 696 MobiDBLite consensus disorder prediction 332 368 - -
Amo01g2562 696 Pfam Protein kinase domain 422 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2562 696 PANTHER OS05G0588300 PROTEIN 54 695 - -
Amo01g2562 696 SUPERFAMILY L domain-like 104 277 - -
Amo01g2562 696 Gene3D Transferase(Phosphotransferase) domain 1 493 695 - -
Amo01g2562 696 Gene3D Ribonuclease Inhibitor 143 289 IPR032675 -
Amo01g2562 696 Gene3D Ribonuclease Inhibitor 66 142 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2562 Amo-Chr1 90387963 90391131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2562 95 688 Receptor kinase-like Gene Family AT1G48480 33.814 3.57e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo01g2562 Pkinase 1.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2562 - - adu:107492411 1326.23