Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2557 ATGTCTGTGCCATTAGAGCAAGACTATGTAGTAGGCTTACCTGAGCTTCCTTCAATGGAAACCACTGAAAAAACCCCTCAAAAAACAACAAAAACCAGTGGTAGCTTCTTGAACCTTAAGGCCACTGAACTTAGACTTGGCTTGCCAGGTTCAGAGTCACCAGAAAAAGATGAAGATGGTGGTGTGTGTTCTGGGAAGTGGAATCTCTCTGGAAATGGTGGATCAGAAATGGGTATTGGTAAAGATGGTAACTTGTTCACTCCTCCAAGAGAAAGAGAACAAGCATCTGTTATGAAAGAGTCAACAAAGCCACTCAGTCAGAACCACAAGCCTCATATATCTTCTGCTACTGCTGCAAAAGAACAGGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCAACTTCTCTGATGAATGGTGAAGTTGATGCATCAGAAGCCAACTCTGGTAATTGCCTTTATGTCAAAGTCAGCATGGATGGTGCTCCATTCCTGAGGAAAGTTGATCTCAAAAACTTTGATTCTTATAGGGATCTCTCTTCAGCCCTCAACAACATGTTTACTTGCTTTACAATCAGTCAATGTGGTTCTCATGGAGTTTCTAGTAGAGACAAGTTGAGTGAAAGTAAGTTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTAAATATTGCAAGAGACTGAGGATAATGAAGAGTTCGGAAGCTATTGGACTAGCACCAAGAGCCATGGAAAAGTGCAAAGGTCGCAACTAG 831 0.4248 MSVPLEQDYVVGLPELPSMETTEKTPQKTTKTSGSFLNLKATELRLGLPGSESPEKDEDGGVCSGKWNLSGNGGSEMGIGKDGNLFTPPREREQASVMKESTKPLSQNHKPHISSATAAKEQVVGWPPIRSFRKNSMATSLMNGEVDASEANSGNCLYVKVSMDGAPFLRKVDLKNFDSYRDLSSALNNMFTCFTISQCGSHGVSSRDKLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTKYCKRLRIMKSSEAIGLAPRAMEKCKGRN* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2557 276 MobiDBLite consensus disorder prediction 100 115 - -
Amo01g2557 276 ProSiteProfiles PB1 domain profile. 156 258 IPR000270 GO:0005515
Amo01g2557 276 MobiDBLite consensus disorder prediction 20 38 - -
Amo01g2557 276 Gene3D - 150 269 - -
Amo01g2557 276 SUPERFAMILY CAD & PB1 domains 150 257 - -
Amo01g2557 276 MobiDBLite consensus disorder prediction 1 38 - -
Amo01g2557 276 MobiDBLite consensus disorder prediction 100 120 - -
Amo01g2557 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 269 IPR003311 GO:0005634|GO:0006355
Amo01g2557 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 56 IPR003311 GO:0005634|GO:0006355
Amo01g2557 276 Pfam AUX/IAA family 42 267 IPR033389 -
Amo01g2557 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 63 269 - -
Amo01g2557 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 17 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2557 Amo-Chr1 90244558 90249234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2557 159 274 B3 DNA Binding Superfamily AT2G46530 31.034 1.25e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Amo01g2557 AUX_IAA 1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2557 K14484 - gmx:100803754 346.28