Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2553 ATGTTGCCAATGCATGCTGACTTTCGCAATGGCTTCGATCGATCCTTATGGCAGGCTTATGTGTCTGCTAACAAGATTTTTGCAGATAAAGTCATGGAGGTCATTAATCCAGAACAGGATTATGTGTGGGTTCATAATTATCATCTTATGGTTCTTCCAACATTTCTGCGAAGGCGTTGTAATAAGATCAAGCTAGGATACTTCCTTCATAGTCCATTTCCTTCATCAGAAATCAATAGGACTTTACCTGTTAGAGATGAAATTTTGAAAGCATTACTCAATTCAGATTTAATTGGCTTTCATACATTTGATTACGCACGCCATTTTCTTTCGTGTTGTAGTCGAATTCTTGGCTTAAAGTCTGAATCTAAAAGGGGTTACATTGAGCTTGAATACTTTGGCCGTATAATATGCATTAAAAGTTTGCTAGTGGGGATTCATGTGGGTTGGCTTCAATCTGCATTAGACCACTCTTCTTCTTTAGTCAAAGCCAGAGAAATCTACAAGAAATTTAAGGGTAAGAAACTTGTTCTTGGTGTTGATGATATGGACATATTCAAAGGTATCAGTCTAAAGCTCTTGGCAATGGAAGAACTCCTTCAGCAGTATCCGGAATTTCAGGGTGAATTTGTGCTTGTCCAGATTGTCAAGGAAGCGCAGAAGGAGACATATATTACTGCTAATAGGATAAACAAAAGGTTTGGTTTTGCTGGTTACCAACCTGTGATCATCATTGATCATCCTATTCCTGTGTATGAGAAGATTTCTTACGTTGCTTTGGCAGATTGTTGCGTTGTGAATGCGGTAAGAGATGGTATGAATTTGATTCCATATGAGTATGTAGTGTGTAGGCAGGGGAGTTCTAAAATGGATGAAGCTCTAGAACTTGATCCTGATTCTCCACATACAAGTGCACTTGTAGTTTCCGAATTCATGGACTGCTCGCCATCTCTTGGTAGTGCAATCCGGGTGAATCCATGGGACATCAATGGTGTAGCTAATGCAATGAATTTGGCCATCAAAATGCCAAGTGGAGAGCAACAGTTGCGACACAATAAGCACTATCGATATGTTAAGTCTCATGATTTAGCTTACTGGAGCAGAAGTTTTATGCGGCATCTAGAACACTCTTGTAAGGATCATTTTAGGAATCGTTGCTGGGGAATGGGGTTTGGTCTGAGTTTTAGAGTCTTGTCCCTTTCTCCAAGTTTCAGGAAGGTTTCGAATTACAACATTGTCTCAGCATATAGAAGGACTAGTTGCAGGGTAATTTTTCTGGATTATGATGGTACAATTGTGCCTCATTCCTCTGTTGTTAAACTCCCGTCATAG 1332 0.3971 MLPMHADFRNGFDRSLWQAYVSANKIFADKVMEVINPEQDYVWVHNYHLMVLPTFLRRRCNKIKLGYFLHSPFPSSEINRTLPVRDEILKALLNSDLIGFHTFDYARHFLSCCSRILGLKSESKRGYIELEYFGRIICIKSLLVGIHVGWLQSALDHSSSLVKAREIYKKFKGKKLVLGVDDMDIFKGISLKLLAMEELLQQYPEFQGEFVLVQIVKEAQKETYITANRINKRFGFAGYQPVIIIDHPIPVYEKISYVALADCCVVNAVRDGMNLIPYEYVVCRQGSSKMDEALELDPDSPHTSALVVSEFMDCSPSLGSAIRVNPWDINGVANAMNLAIKMPSGEQQLRHNKHYRYVKSHDLAYWSRSFMRHLEHSCKDHFRNRCWGMGFGLSFRVLSLSPSFRKVSNYNIVSAYRRTSCRVIFLDYDGTIVPHSSVVKLPS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2553 443 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 443 - -
Amo01g2553 443 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 443 IPR001830 GO:0003824|GO:0005992
Amo01g2553 443 CDD GT20_TPS 12 375 IPR001830 GO:0003824|GO:0005992
Amo01g2553 443 Gene3D Glycogen Phosphorylase B; 3 160 - -
Amo01g2553 443 Gene3D Glycogen Phosphorylase B; 161 360 - -
Amo01g2553 443 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 379 - -
Amo01g2553 443 Pfam Glycosyltransferase family 20 9 375 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2553 Amo-Chr1 89909340 89911544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2553 1 443 Trehalose Biosynthesis Gene Families AT1G23870 66.225 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2553 K16055 - gmx:100812031 670.233