Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2542 ATGGCCGCTCGCAGACTTTCATGGCTTCTCTCACGCTCCCTTTCTGCTGCTTCTGGAGCTGACTCTTTTCTTCACTCACTCGGAAGAAACTCTGGCGGAGGGTGCAGAAAACTGAAGAGGTTTAGCACAGCTGCAGCGGTTGATGAAGTGATTATTCCACAAGTTCAAATCAATTACACTCAGCATCTCATAGATGGCAAGTTTGTGGATTCTGCATCAGGGAAGACTTTTCCAACCTATGACCCGCGCACAGGGGAAGTTATAGCTCAAGTAGCTGAAGGAGACGCCGAAGATATCAACCGCGCCGTCGCAGCAGCACGAAAGGCCTTTGATGAAGGACCCTGGCCTAAAATGACTGCTTATGAAAGGTGTCGGATATTGCTGCGGTTTGCTGATTTGGTGGAGAAGCATAGTAAAGAGCTTGCAGCTCTAGAGACATGGAACAATGGAAAGCCTTATGAGCAATCTTTCAACGACGAATTGCCATTGTTTGTGCGTTTGTTCCACTACTATGCTGGTTGGGCTGATAAAATTCACGGGATGACTGTACCGGCTGATGGAAAATATCACGTGCAAACATTGCATGAACCAATTGGGGTTGCAGGACAAATCATACCTTGGAATTTTCCTCTAATTATGTTTGCTTGGAAAGTTGGTCCAGCTCTGGCTTGTGGTAACACTGTCATTTTGAAGACTGCTGAGCAAACACCCCTCACCGCTCTTTATGTGGCTAAACTCTTTCATGAGGCTGGTCTTCCACCAGGTGTTCTGAATATAGTTTCTGGATTTGGCCCAACTGCTGGTGCAGCTCTTGCAAGTCACATGGACGTTGACAAGCTAGCATTTACTGGATCAACAGACACTGGAAAAATTGTGCTTGAATTGGCTGCAAGAAGCAATCTGAAGCCTGTGACATTGGAGTTAGGAGGCAAATCACCTTTTATTGTGTGTCATGATGCTGATGTTGACCACGCTGTTGAACAAGCACACTTTGCTCTCTTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTCGAACCTTTGTACATGAGCGTATCTATGATGAGTTCTTGGAGAAGTCAAAGAAACGTGCTTTGAGACGCGTTGTTGGTGATCCATTCAAGAAGGGTGTTGAACAAGGCCCTCAGATTGACACAGAACAATTTGAGAAAGTGCTTAGGTACATAAGATCTGGAATTGAAAGCAATGCTACCCTTGAATGTGGGGGTCAGCGATTGGGCTCAAAAGGCTTCTTCATCGAGCCAACTGTTTTCTCCAATGTTAAGGACGATATGCTGATAGCCAAAGACGAAATATTCGGGCCGGTTCAGTCCATCTTGAAATTCAAGGACATTGAAGAAGTAATAAAGAGAGCAAATGCAACACGATATGGACTAGCAGCAGGAGTGTTCACAAAGAACGTACACACAGCAAACACATTGATGAGGGCACTGAGAGTTGGAACGGTTTGGATCAACTGTTTCGATGTATTCGACGCTGCCATTCCCTTTGGAGGCTACAAGATGAGTGGCATTGGGAGGGAGAAAGGAATCTACAGTCTCAACAACTACCTTCAGATCAAAGCTGTTGTTGAACCACTCAAGAATCCTGCTTGGATTTAA 1623 0.4547 MAARRLSWLLSRSLSAASGADSFLHSLGRNSGGGCRKLKRFSTAAAVDEVIIPQVQINYTQHLIDGKFVDSASGKTFPTYDPRTGEVIAQVAEGDAEDINRAVAAARKAFDEGPWPKMTAYERCRILLRFADLVEKHSKELAALETWNNGKPYEQSFNDELPLFVRLFHYYAGWADKIHGMTVPADGKYHVQTLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVILKTAEQTPLTALYVAKLFHEAGLPPGVLNIVSGFGPTAGAALASHMDVDKLAFTGSTDTGKIVLELAARSNLKPVTLELGGKSPFIVCHDADVDHAVEQAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKKRALRRVVGDPFKKGVEQGPQIDTEQFEKVLRYIRSGIESNATLECGGQRLGSKGFFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIEEVIKRANATRYGLAAGVFTKNVHTANTLMRALRVGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLNNYLQIKAVVEPLKNPAWI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2542 540 SUPERFAMILY ALDH-like 55 534 IPR016161 GO:0016491
Amo01g2542 540 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Amo01g2542 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 501 IPR016163 GO:0016620
Amo01g2542 540 CDD ALDH_F2BC 57 531 - -
Amo01g2542 540 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 28 540 - -
Amo01g2542 540 Pfam Aldehyde dehydrogenase family 68 530 IPR015590 GO:0016491
Amo01g2542 540 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Amo01g2542 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 530 IPR016162 GO:0016491
Amo01g2542 540 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 28 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2542 Amo-Chr1 89457874 89462762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2542 1 540 Aldehyde Dehydrogenase Gene Family AT3G48000 79.705 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2542 K00128 - tcc:18603880 942.954