Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2541 ATGAATCATAACAATAGTAATAATCTCATTCATCAAAGGGACCGCCGTGTGCTATCACTACCGGCGGTGCACCCTTGCGAAGGGATATCTCCGAACACCCTCATTTCCTCCCTTGTTACCCTCTCCCAGAACATATGCAACTACCAACACAGCTTCTTCGCAACACAGAGACGAAACGCAAGAGAAGCAATCCGCCAAGTCAGCATCATCCTCTTCTTCCTTCTCGAAATTCAAGAACGAAGCTTACCAATCCCTCAATCCACCGTCCTCAGCCTCTCGGAACTTCACTTCACGTTTCAGAAGATCCACTTCTTGCTGCAAGATTGCGTACTTGAAGGCGCGCGTCTCTTGCTTCTCGCCAAGTCCAACCACGTGGCCTCCCTGTTTCGATCCCTAGTTCGCGCCGTGGCGACTTCCCTCGACGTTCTTCCGCTCCACGAAATCGAGGTATCCGGCGAGGTGAGGGAGCTGGTGGAGCTGCTGGCGAAGCAAGCGAGGAAAGCAAAGATGGAGCACGAACCTAAAGACGAGCACATGAGCAAGAGTGTTCATTCAATTCTAAAACAGTTGGAAAAAGGAATCGAAGTGGATAAGAATGCATTCAAAGAGATCATCGAGTACCTAGAAATCAAGACGTGGAACGAGTGTAACAGAGAGATAAATCTTTTAGAAGAAGAAGTCGCTTTAGAATGCAGTAACTGCAACGAGCGAGAGCATGAGCGAGACGCTCCTCTATTGAGTAGTTTGTTAGGGTTGATGAGCTACTGCAGGGTAGTGATCTTTGAAACACTAGAAATTAGCAATAACAGAGAGAAATCAGAAACGAGAATGAGCACGGAAATGATAACGTCCGTCAATCCAGAGGACTTTCGCTGCCCAATATCTCTGGAGATGATGACGGATCCCGTGACGGTTTCAACTGGACAAACGTACGACAGAGCTTCCATCAAGAAATGGCTGAAAGCAGGGAACACCATATGCCCTAAAACAGGGGAGAATCTCTCAAACACGGAACTCGTCCCAAACACAACCCTCAAGAGACTCATCCAACAGTTCTGCAATGATAACGGCATTTCCCTCTCAAAATCAACCAACCGTAACCGCGACTTAGCCAATACAATATTACCAGGCAGTGCGGCCAACGCTCACGCCATGCAGTTCGTCTCATGGTTCCTCACACGGATGCTCGCCTTCGGTACGGACAAACAGAAATCCAAATCCGCTTACGAGATTCGGTTACTTGCTAGGTCCAATCTGTTCAACAGAGCGTGCTTGATCCAAGTTGGAACAATTCCGCCTCTGCTTGATCTTCTTCTCTGCACGGACGAGAAATCCACACAGGAAAACGCAATTTCCGCGTTGATGAAGCTTTCTAAGCATGCCACTGGGCCCCAGCACATCATGGATTCTAACGGTCTGAAACCGATTCTAACGGTTTTAAAGAAAGGGCTCAGCCTCGAAGCGCGGCAAGTTGCGGCGGCTACTGTTTTCTACCTTTCATCAGTGAGAGAGTATAGAAAGGTGGTAGGGGAAAACCCTGAGGTGGTTCCTTCTCTGGTGGAGTTGGTGAATGAAGGAACCACGTGCGGGAAGAGGAATGCAGTGGTTGCGATTTATGGTTTGGTTCTTGTTCCAAGGAACCAGAAACGAGCAATCGAAGCGGGTGTCGTTCACGCGCTCGTTGGCGTGTTGGGATCGTCCGAGAAGGACGAGCTTGTAGCTGAATGTTTGGCGGTTTTGGCCGTTTTAGCTGAGAATGTGGAAGGAGCGAACGCGATTTTGCGCGCTTCGGCTCTGTCGTTAATTACTGGGATGCTCCAAACGGCGTCGTTGCGCTTGGGGAAAGAGCACTGTGCTTCAATTTTGCTTTCGCTTTGTGTTAACATTGGTGCTGAGGTTGTGGCGGTTTTGGCCAAGGACCCTTCGGTGATGCCTCTGCTTTACTCGCTTCTCACGGAAGGTACTTCCCACGCGGCGAAGAAAGCAAGGTTCCTCATCAAAGTTCTGCAGGATTTCAGTGAAACCAGAGCTTCGGGTTTCAAGGGTTCCTCTGTTCCGCAGGAACCATCGCTTCCTGTTTGGTGA 2085 0.4935 MNHNNSNNLIHQRDRRVLSLPAVHPCEGISPNTLISSLVTLSQNICNYQHSFFATQRRNAREAIRQVSIILFFLLEIQERSLPIPQSTVLSLSELHFTFQKIHFLLQDCVLEGARLLLLAKSNHVASLFRSLVRAVATSLDVLPLHEIEVSGEVRELVELLAKQARKAKMEHEPKDEHMSKSVHSILKQLEKGIEVDKNAFKEIIEYLEIKTWNECNREINLLEEEVALECSNCNEREHERDAPLLSSLLGLMSYCRVVIFETLEISNNREKSETRMSTEMITSVNPEDFRCPISLEMMTDPVTVSTGQTYDRASIKKWLKAGNTICPKTGENLSNTELVPNTTLKRLIQQFCNDNGISLSKSTNRNRDLANTILPGSAANAHAMQFVSWFLTRMLAFGTDKQKSKSAYEIRLLARSNLFNRACLIQVGTIPPLLDLLLCTDEKSTQENAISALMKLSKHATGPQHIMDSNGLKPILTVLKKGLSLEARQVAAATVFYLSSVREYRKVVGENPEVVPSLVELVNEGTTCGKRNAVVAIYGLVLVPRNQKRAIEAGVVHALVGVLGSSEKDELVAECLAVLAVLAENVEGANAILRASALSLITGMLQTASLRLGKEHCASILLSLCVNIGAEVVAVLAKDPSVMPLLYSLLTEGTSHAAKKARFLIKVLQDFSETRASGFKGSSVPQEPSLPVW* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2541 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Amo01g2541 694 Pfam Armadillo/beta-catenin-like repeat 421 454 IPR000225 GO:0005515
Amo01g2541 694 CDD RING-Ubox_PUB 290 332 IPR045210 -
Amo01g2541 694 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Amo01g2541 694 PANTHER OS07G0532750 PROTEIN 12 679 - -
Amo01g2541 694 SUPERFAMILY RING/U-box 285 359 - -
Amo01g2541 694 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Amo01g2541 694 PANTHER U BOX DOMAIN-CONTAINING 12 679 - -
Amo01g2541 694 Gene3D - 379 678 IPR011989 -
Amo01g2541 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 598 IPR000225 GO:0005515
Amo01g2541 694 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Amo01g2541 694 SMART arm_5 417 459 IPR000225 GO:0005515
Amo01g2541 694 SMART arm_5 543 585 IPR000225 GO:0005515
Amo01g2541 694 SMART arm_5 460 501 IPR000225 GO:0005515
Amo01g2541 694 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Amo01g2541 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 472 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2541 Amo-Chr1 89369574 89371658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2541 15 691 U-box Gene Family AT1G60190 37.209 1.23e-153 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2541 - - mtr:MTR_4g107010 878.241