Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2528 ATGGAACCCAGCCCTGGTCGTGGTGCTGCTCGCCTCTCTCTGTGTCGCGGTTCTGCTCAGCCTGATCTTCTCGAACCCAGCCATGGTCGTGGTGCTGCTCGCCTCTCTCTGTGTGAGTACGAGAAGGTTGAGAAGATTAGGGAAGGAACCTACGTCGTCGTTTGCAAGGCTCGCGACCACGTTACCAATGAGACCATCGCTCTCAAGAAGATTTGCCTTGAGCAGGAGGATGAAGGCGTTCCTAGCACTGCATTTCGCGAGATTTCTCTCCTCAAGGAAATGCAGCACAGGAATACTATTAGGTATTCTTTTCTTCATCCTAATCTCACTTTCTGCTATTATTATTTGAATGCGTGTATCTCTGATGAATGCTACTTTTTAGTCCATCCTTATGTTGCCACTGGAAATAAGAACTCTAAATTTGGCATTAGAAATGAGATGCTGCAGTGGTTTTTAGATGCTATAAAGGAGCATTCTAATGAGGTTAAGCTTGTAGGTGTCCACTGCCATCTTGGGTCAACAATTACCAAGGTAGACATCTTTAGGGATGCTGCTGTTATTATGATCAACTACATTGACCAAATCCGAGATCAAGGTTTTGAAATTTGTAGCTGGACCAAGTCACAGCTTCGAGGACGGTGTGGTTGCTACAAGCATTCATTCTATGGTAAAATGCAAGACACGGGCAGTGATAAAAATAATGGAGCTCATAATGGATGA 720 0.4486 MEPSPGRGAARLSLCRGSAQPDLLEPSHGRGAARLSLCEYEKVEKIREGTYVVVCKARDHVTNETIALKKICLEQEDEGVPSTAFREISLLKEMQHRNTIRYSFLHPNLTFCYYYLNACISDECYFLVHPYVATGNKNSKFGIRNEMLQWFLDAIKEHSNEVKLVGVHCHLGSTITKVDIFRDAAVIMINYIDQIRDQGFEICSWTKSQLRGRCGCYKHSFYGKMQDTGSDKNNGAHNG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2528 239 Gene3D Alanine racemase 129 205 IPR029066 -
Amo01g2528 239 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 128 201 - -
Amo01g2528 239 Pfam Protein kinase domain 40 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2528 239 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 129 202 IPR022644 GO:0003824
Amo01g2528 239 SUPERFAMILY PLP-binding barrel 126 202 IPR029066 -
Amo01g2528 239 SUPERFAMILY Protein kinase-like (PK-like) 38 134 IPR011009 -
Amo01g2528 239 Gene3D Phosphorylase Kinase; domain 1 36 128 - -
Amo01g2528 239 PANTHER DIAMINOPIMELATE DECARBOXYLASE 128 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2528 Amo-Chr1 88876557 88881996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2528 37 101 Core Cell Cycle Gene Families AT3G48750 80.000 8.24e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Amo01g2528 Orn_Arg_deC_N 7.4e-12 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2528 K01586 - adu:107472072 166.777