Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2476 CGGAACACATTCATCATAGTAATTTTGCGTGTTTCCCTCACACTCCGACGAAGGTGCGTGTTCTCTAACTCCGGCATCTCTTCCAGCTGCGGTTTCTCCTTCACTTCACAATCACATTCACCAATACCACAGGTTTCAACAATGGTTAGAAAAAAGGCAGATGATGCAGGCCCATCAGCAAAGACTAAGGCAAGTAGCAAAGATGCCCCAAAGAAAGAAAAAATTTCCATATCTGCCATGCTGGCCAGCATGGATGAAAAGCCTGATAAACCCAAAAAGCCCTCTTCCACTAAGCCCAAGGCAAAAGCCGCTCCAAAACCTTCTGCATATACTGATGGTATTGATCTTCCACCATCTGATGAAGATGAAGATGAAGCTATCTTGGAGGAGGAGGAAGAGAATGCCTCCAAACGGCATCAGAGGAGTGAGTTGAAGACACTTGAAGTATCAACCACAGACAAAGAGCTGAAGAAGCGTGAGAAGAAGGATATTTTAGCGGCTCATGCTGTTGAGCAGGCAAAGAAGGAAGCTCTTAAGGATGACCACGATGCTTTCACGGTGGTCATTGGAAGTCGGACTTCAGTGCTTAATGGAGATGATGATGCCGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCGGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCGTCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGGAAGTCCACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTCTGGTTGAACAGGAGGTAGTTGGTGATGATAAAACCGCACTTGAGGCTGTTGTTTCAGCTAATGAAGAACTGGTTAAAGTTCGACAAGAAGTTGCTTCTTTGCAAAATGCAACTGCTTTGGAAGGAAGTGTTGACAAAGATAATAATGATGAGGAAGATGATGCAGGAGAGAAGCTAGCAGAGCTGTACGAGAAACTACAGCTGATGGGTTCTGATGCTGCTGAAGCTCAAGCATCAAAGATTTTAGCAGGTTTGGGTTTCACGAAGGATATGCAGGGCCGGCCAACAAAATCATTTAGTGGTGGATGGAGAATGAGGATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTTTATTATTGCTTGATGAACCCACAAATCACCTTGACTTGAGGGCTGTTCTCTGGTTGGAAGAGTACCTGTGCCGTTGGAAGAAGACTTTGGTGGTTGTCTCACACGATAGGGATTTCCTCAATACAGTTTGCACTGAGATTATTCATCTTCATGACTTGAAACTCCATTTCTATCGTGGAAACTTTGATGACTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATGAACAAGAAGTATGAGATTTATGACAAGCAACTGAAAGCTGCAAAAAGGAGTGGTAACCGAGCTCAGCAAGAAAAGGTGAAGGACCGAGCGAAGTTTGTGGCAGCCAAAGAAGCATCTAAAGCCAAGGGCAAAGGCAAGGGCAAGGTTGATGAAGATGAGGCCCCACCAGAGGTTCCACAGAAGTGGAGGGACTACAGTGTCGAGTTTCACTTTCCTGAACCTACCGAGCTCACACCTCCACTACTTCAGCTTATTGAAGTGAGCTTCAGTTATCCGAACCGTGAGGATTTCAGACTGTCAAATGTTGATGTTGGCATTGATATGGGAACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTACTGAACCTTCTGGCTGGTGATTTGGTTCCAAATGAGGGTGAAGTTAGGAGGAGTCAGAAGTTGCGGATAGGAAGATACTCGCAACACTTTGTGGACCTTCTAACTATGGACGAAACCCCCGTTCAGTATCTTCTTCGTCTCCATCCTGATCAGGAGGGACTTAGCAAGCAAGAGGCTGTCCGCGCAAAACTCGGAAAGTTTGGGCTACCTAGTCATAACCATCTCACGCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTAGGGTGGTCTTCACCTCAATATCCATGTCAAGACCCCATATTTTATTGTTGGATGAACCCACTAATCATCTGGACATGCAAAGTATTGATGCATTGGCCGATGCACTAGACGAGTTCACTGGTGGAGTTGTTCTTGTTAGTCATGACTCGAGATTGATATCGCATGTATGTGAGGATGAAGAGAGGAGTCAAATCTGGGTTGTTGAGGATGGTACTGTCAGGACTTCGGTTGGAACATTTGACGATTACAAAACCGAGTTGATGAAAGAAATCAAAGCTGAAGTTGATGATTGA 2316 0.4486 RNTFIIVILRVSLTLRRRCVFSNSGISSSCGFSFTSQSHSPIPQVSTMVRKKADDAGPSAKTKASSKDAPKKEKISISAMLASMDEKPDKPKKPSSTKPKAKAAPKPSAYTDGIDLPPSDEDEDEAILEEEEENASKRHQRSELKTLEVSTTDKELKKREKKDILAAHAVEQAKKEALKDDHDAFTVVIGSRTSVLNGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKVRQEVASLQNATALEGSVDKDNNDEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFVAAKEASKAKGKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPNEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISHVCEDEERSQIWVVEDGTVRTSVGTFDDYKTELMKEIKAEVDD* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2476 771 Gene3D - 510 771 IPR027417 -
Amo01g2476 771 Coils Coil 459 479 - -
Amo01g2476 771 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 51 771 - -
Amo01g2476 771 ProSitePatterns ABC transporters family signature. 367 381 IPR017871 GO:0005524
Amo01g2476 771 MobiDBLite consensus disorder prediction 52 142 - -
Amo01g2476 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 465 IPR027417 -
Amo01g2476 771 SMART AAA_5 233 439 IPR003593 -
Amo01g2476 771 SMART AAA_5 570 746 IPR003593 -
Amo01g2476 771 MobiDBLite consensus disorder prediction 498 519 - -
Amo01g2476 771 MobiDBLite consensus disorder prediction 116 130 - -
Amo01g2476 771 PANTHER - 51 771 - -
Amo01g2476 771 CDD ABCF_EF-3 209 440 - -
Amo01g2476 771 Pfam ABC transporter 561 696 IPR003439 GO:0005524
Amo01g2476 771 Gene3D - 206 491 IPR027417 -
Amo01g2476 771 CDD ABCF_EF-3 544 746 - -
Amo01g2476 771 Pfam ABC transporter 224 395 IPR003439 GO:0005524
Amo01g2476 771 Coils Coil 285 305 - -
Amo01g2476 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 753 IPR027417 -
Amo01g2476 771 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 209 470 IPR003439 GO:0005524
Amo01g2476 771 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 544 769 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2476 Amo-Chr1 83671838 83675376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2476 543 756 Calmodulin-binding Proteins AT2G36910 29.289 1.36e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2476 K06184 - gmx:100806865 1196.8