Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2459 ATGGACACCCTCCAATTTTTCCTCTTCATATTCCAGCTTTTACTCTGCCTCAACCCAATCTCCGCGGTGGACTTCCTCTTCAACTCCTTCACCGGCGCCACCAACACCACCAACGTGACCCTCATCGCCGACGCGCTCGTAGACTCCTCCGTCGTCCGCATGACCAACGACTCCAACCAATACTCCTTCGGCAGAGCCTTCTACACTAAAAAAGTCACCATCAAGAAACCCTTCCCTTCTTCTTCTTCTTCTTCAAGCAACTTCTCTTCCTTCTCGGCCTCCTTCGTCTTCTCCATCTTGCCGCAGATCCCGACGAGTCCCGGATTTGGCCTCGCTTTCGTTCTCTGCAACACAACCTCCCCTCCCGGCGCACTCGCCAGCCAGTACTTCGGTCTCTTCACCAACGCCACCTCACCTCCCCTGTTCCCGCTCCTCGCCGTCGAGTTTGACACAGGCCAGAACCCTGAGTTCGGCGACCCCGACGACAACCACCTCGGCATCGACCTCAACAACATCGTYTCCAAGAAAACTCAGYCCGCAGGGTACTACAACTCCACCGGAGGATTCGTCCCCCTYCGAATGCGAACGGGACAGAACGTTCACGCTTGGATCGATTTCGACGGCGAGACTATGCAGATCAACGTCACCGTCGCTCCGGYGGGSCTTCCCCGCCCGAWGAARCCAACTCTCTCGTACACAGACCCGGAAATGGCGAACTACTTGTCTTCTGATATGTTCGTTGGGTTCTCTGCTTCGAAAACCAATTGGATCGAGGAACAGAGAGTACTCGCATGGAGTTTCAGCACTTTAGGTTCCGCAAGAGACATAAAYACAACTAATTTACCAGYTTTCCAGCCTACAACCTCCTCTTCCTCTCTCTCCGGCGGCGCAATCGCCGGAATCGTTCTYGGCTGCGTCGCTTTCGTGGCAATCTTKGTCTCGATCTGTTACCTGTGGTGGCGAAAGAAGATGAAGGAGSAAGAAGAAGAGATCGAGGATTGGGAACTGGAGTACTGGCCCCACAGATTCTCCTACGACGAACTCAGAACCGCAACGGGAGAATTCAGGAGGGAGAAYCTTCTAGGCTCCGGCGGGTTYGGAAGAGTATACAGAGGAATGCTTCAGAACAAAACAGAGGTTGCCGTGAAATGCGTCAACCACGACTCAAAGCAAGGCGTGAGGGAATTCATGGCGGAAATTTCAAGCATGGGGAGRCTGCAGCACAAGAACTTGGTCCAAATGAGAGGGTGGTGCAGAAAAGGAAACGAGCTTATGCTGGTTTATGACTTCATGCCCAACGGGAGCCTCAACAAGTGGGTGTTTGACAACCCGCCGAAGCTTCTAGAATGGGGGAGGAGGCGAAGGGTGCTCGTCGACGTGGCGGAGGGGCTCAACTACCTTCACCACGGGTGGGACCAGGTTGTTATTCACAGGGATATTAAGTCTAGTAATATCTTGCTAGACTCTGACATGAGGGGGAGGCTTGGGGACTTTGGTTTGGCGAAGCTATACCAGCAGGGGGAGGTTCCCAACACCACGCGTGTCGTTGGCACATTGGGGTACCTCGCGCCAGAGTTGGCTACTGTGGCGGTGCCAACTTCGGCGAGTGATGTTTATAGTTTTGGAGTGGTGCTTTTGGAGGTGGCATGTGGGAGGAGGCCGATTGAGACGTCGGCGGCGGAAGAGGAGGTGGTGCTAATTGACTGGGTGAAGGAGCTGTACGCCAGTGGGAGGATGTGTGAGGCTGCGGACCCGAGGATTGAAGGGGAGTATGAGGTTGGGGACATGGAGATGGTGCTCAAGCTTGGGTTGGCTTGTTGCCACCCTGAGCCTCAGAGGAGGCCAACGATGAAGGAGGTGGTTGCAGTGCTTGTGGGGGACAATGTTGCGGAGGAGCCGGGGAAAGTGTTGTCTGATTTGGTGCGTGGCGACGGTGGTGGTCTGGAGAAAGAGGAGGAGACCACGGCTTTACAGGGAAACCTTCCGGATTGA 1992 0.5437 MDTLQFFLFIFQLLLCLNPISAVDFLFNSFTGATNTTNVTLIADALVDSSVVRMTNDSNQYSFGRAFYTKKVTIKKPFPSSSSSSSNFSSFSASFVFSILPQIPTSPGFGLAFVLCNTTSPPGALASQYFGLFTNATSPPLFPLLAVEFDTGQNPEFGDPDDNHLGIDLNNIVSKKTQXAGYYNSTGGFVPLRMRTGQNVHAWIDFDGETMQINVTVAPXGLPRPXKPTLSYTDPEMANYLSSDMFVGFSASKTNWIEEQRVLAWSFSTLGSARDINTTNLPXFQPTTSSSSLSGGAIAGIVLGCVAFVAIXVSICYLWWRKKMKEXEEEIEDWELEYWPHRFSYDELRTATGEFRRENLLGSGGFGRVYRGMLQNKTEVAVKCVNHDSKQGVREFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDFMPNGSLNKWVFDNPPKLLEWGRRRRVLVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDSDMRGRLGDFGLAKLYQQGEVPNTTRVVGTLGYLAPELATVAVPTSASDVYSFGVVLLEVACGRRPIETSAAEEEVVLIDWVKELYASGRMCEAADPRIEGEYEVGDMEMVLKLGLACCHPEPQRRPTMKEVVAVLVGDNVAEEPGKVLSDLVRGDGGGLEKEEETTALQGNLPD* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2459 663 Coils Coil 317 326 - -
Amo01g2459 663 Pfam Legume lectin domain 23 281 IPR001220 GO:0030246
Amo01g2459 663 SMART serkin_6 355 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2459 663 Pfam Protein kinase domain 356 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g2459 663 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Amo01g2459 663 Gene3D Transferase(Phosphotransferase) domain 1 431 633 - -
Amo01g2459 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Amo01g2459 663 PANTHER - 7 655 - -
Amo01g2459 663 ProSitePatterns Legume lectins beta-chain signature. 145 151 IPR019825 -
Amo01g2459 663 CDD lectin_legume_LecRK_Arcelin_ConA 23 269 IPR001220 GO:0030246
Amo01g2459 663 CDD STKc_IRAK 361 624 - -
Amo01g2459 663 Gene3D Phosphorylase Kinase; domain 1 340 430 - -
Amo01g2459 663 Coils Coil 328 337 - -
Amo01g2459 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 284 IPR013320 -
Amo01g2459 663 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 7 655 - -
Amo01g2459 663 SUPERFAMILY Protein kinase-like (PK-like) 331 624 IPR011009 -
Amo01g2459 663 Gene3D - 21 283 - -
Amo01g2459 663 MobiDBLite consensus disorder prediction 640 663 - -
Amo01g2459 663 ProSiteProfiles Protein kinase domain profile. 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2459 Amo-Chr1 82799035 82801856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2459 21 626 Receptor kinase-like Gene Family AT1G15530 66.174 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo01g2459 Pkinase 4.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2459 - - lang:109362483 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2459 01 82799035 82801856 Amo11g1835 11 91363311 91366341 hybridization