Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2455 ATGGCTGGTGGTGAAGTTTTGAGGCAGAATTTACCTGAGAAGCTTGAGGAATCTCCTTCTGGTGCAAATGAGCTTCATGTTTTAGCTGTTGATGATAGTCTTGTGGATAGAAAGGTCATTGAACGYTTGCTCAAGATATCTTCTTGCAAAGTGACAGTGGTGGAGAGTGGAACTAGAGCTCTTCAGTATTTGGGGTTGGATGGGGATAAGAAAAGCTCCATTGGATTTGATAGTGTGAAGGTTAATTTGATAATGACTGATTATTCGATGCCGGGGATGACTGGTTATGATCTTCTCAAGAAAATCAAGCAGGAATCGTCTGTTTTTAGAGAGATTCCAGTGGTGATCATGTCATCGGAGAATATCTTGACTAGAATTGATAGATGCTTGGAGGAAGGAGCAGAGGACTTTCTATTAAAGCCGGTGAAGTTATCCGATGTAAGACGCTTAAAAGATTTCATCATGARRGGTGAAGTGAAGGAAGGAGAGAAAAGATGCTGCAAAAGATCGCGATCYGAAGATTGCAGCCCATCGYCAATGACTCATCCCTGCGATTCATCGCTATTGTCATCGTTGTCTTCGTCTTCAGTACTTTCACCATTGTCACCATCTACCTTGTCCTCCAAGAAATCCAGATTGTGA 642 0.419 MAGGEVLRQNLPEKLEESPSGANELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGDKKSSIGFDSVKVNLIMTDYSMPGMTGYDLLKKIKQESSVFREIPVVIMSSENILTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMXGEVKEGEKRCCKRSRSEDCSPSXMTHPCDSSLLSSLSSSSVLSPLSPSTLSSKKSRL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2455 213 CDD REC_typeA_ARR 27 150 - -
Amo01g2455 213 Gene3D - 25 174 - -
Amo01g2455 213 ProSiteProfiles Response regulatory domain profile. 26 155 IPR001789 GO:0000160
Amo01g2455 213 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 213 IPR045279 GO:0009736
Amo01g2455 213 SMART REC_2 25 151 IPR001789 GO:0000160
Amo01g2455 213 Pfam Response regulator receiver domain 27 148 IPR001789 GO:0000160
Amo01g2455 213 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 9 213 - -
Amo01g2455 213 SUPERFAMILY CheY-like 23 150 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2455 Amo-Chr1 82356828 82358608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2455 4 169 Response Regulator Gene Family AT3G48100 69.643 1.34e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo01g2455 Response_reg 7.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2455 K14492 - gmx:100527518 292.352