Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2422 ATGTTAAAAAAGCATCAAAGCAATGAAAAAAGAGAAAGAAAAAAATGGCGCAGAAAAAAATACGGAAGCTCCGATTCCGCCTCGAGTCCAACTCAATTAGCTCGATCGAAGAAGATGTGTAGCACCTTCGCCGCCGCCGCAGACTCCTCCATCTCCGGCGACGGTGACTCCCCCGCCGCCGGCGAGATTATGCTGTTCGGCGTTAGGGTGGTGGTGGACTCCATGAGGAAAAGCGTCAGTATGAACAATCTGTCGCAGTACGTGCATCCTCAAGATGACTCCAACAACAACAAAGACGCTGCCTTCTCCGCCACCGGTTACGCGTCCCGACGACGCGCTCCTCCAACTCGGCAAGAACCGCGAGCGCGAGCGCAAGCGAGGTTCGAAATTTCAATACCACGCATATATAAATTTCTCCGATCGATCACTGATCTCTGTGTTCCCTGGACGGAGGAAGAGCACAAGCTATTCCTGGTGGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGGATCTCTAGGAACTACGTCAAGACTCGGACGCCCACGCAGGTCGCCAGCCATGCTCAGAAGTACTTCCTCCGCCGGAGCAATCTCAACCGCCGTCGGCGCAGATCCAGCCTCTTTGACATCACCACCGATTCGGTCTCTTCGATCCCAATGGAGGAAGAACAGATCCAGAACGGAGACATTGTGCCTCATTCACAGCCTCTGTGCCCTGCAGCCCCTGAGAATAGCAACACCAATGGATTTCCAATGGTGCCCGTGTATCCGTTGGGGGTTGGTCCAGGTGTGATTTCATCAGTCGAAGCTGGGAATCCAATGGATGAACTAACTCTAGGACAGGCAAACATGGAGCTTAATGCGCAAACCAAGCTACTCCATCCGATTCCTGTTGCTTCAAATCCTAAAACCTGCACCGTGTCTGATGTTGCCTCCGGCTCTAATTCGCCCCTCGACTTGCCAACACTGTCCCTGGGACTATCCTTCACATCTGATCAAAGACAGACTCCATCAAGACATTCGGCTTTCCATTCAATTCCGAGTTTAAATAACGGAGATAGCGTCATAAGTGTTGCTTGA 1083 0.518 MLKKHQSNEKRERKKWRRKKYGSSDSASSPTQLARSKKMCSTFAAAADSSISGDGDSPAAGEIMLFGVRVVVDSMRKSVSMNNLSQYVHPQDDSNNNKDAAFSATGYASRRRAPPTRQEPRARAQARFEISIPRIYKFLRSITDLCVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSSIPMEEEQIQNGDIVPHSQPLCPAAPENSNTNGFPMVPVYPLGVGPGVISSVEAGNPMDELTLGQANMELNAQTKLLHPIPVASNPKTCTVSDVASGSNSPLDLPTLSLGLSFTSDQRQTPSRHSAFHSIPSLNNGDSVISVA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2422 360 MobiDBLite consensus disorder prediction 105 124 - -
Amo01g2422 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 197 IPR017930 -
Amo01g2422 360 ProSiteProfiles Myb-like domain profile. 148 193 IPR001005 -
Amo01g2422 360 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 195 IPR006447 GO:0003677
Amo01g2422 360 Pfam Myb-like DNA-binding domain 148 193 IPR001005 -
Amo01g2422 360 ProSiteProfiles SANT domain profile. 144 197 IPR017884 -
Amo01g2422 360 SUPERFAMILY Homeodomain-like 147 198 IPR009057 -
Amo01g2422 360 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 147 360 - -
Amo01g2422 360 PANTHER KIN2 147 360 - -
Amo01g2422 360 Gene3D - 147 199 - -
Amo01g2422 360 PANTHER KIN2 55 117 - -
Amo01g2422 360 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 55 117 - -
Amo01g2422 360 SMART sant 145 195 IPR001005 -
Amo01g2422 360 CDD SANT 148 193 IPR001005 -
Amo01g2422 360 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2422 Amo-Chr1 81313155 81315678 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo01g2422 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2422 - - aip:107632799 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2422 01 81313155 81315678 Amo11g2088 11 114594640 114597430 hybridization