Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2411 CTTCAAGTATTCATTCATAATTCTAATTATTATATTATTCCTAAACACTTGAATGAGAAACAAGAAATCGTTAGAATTGAAATAATTGTAATAATAATAACAATGGAAGGTCCTGTCATCAACGAGTCCACATTCTCCTCCGCCAACCCTTCCTCTTACTCTCTCTCTGAGATTTGGCCCGCCACCGCAACCACCTTCACTCCCATCCACAACCATAAGAGGAAGGAATCATCCCCCTCCTCCTCCACCACCACCGCCACCGCCAATCACTTGAATGATTCGTATGGCAATAAGCATAGGAAACTGGAAGGATCCTTCCAGGAGGAAAACCGTGCTGGCGATTCAAAAGCCGAGGTAGGTGCCAGTTTAGTTGCCGGTAACAAGTTAGCTCGGCAAGGTGGTGGTGGCGGCGGCGGCGGCGGCGCTGCTAAGCCTTCTTGTGAGCAACCGCCTAAACAAGACTACATCCATGTGAGAGCCAGGAGAGGCCAGGCTACCGATAGCCACAGTCTCGCTGAGAGAGCCAGGAGAGAAAAGATTAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGATGTAACAAGGTAATTGGCAAAGCACTTGTGTTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAACATGAATTCTGTTGTTGAATGTTTTCCTTCAAAAGACGTTCAGGTTGGTAATCAGCCATTTGATATTGCCGGAATGATATTCGGATCACAAGCAACCAGGGGGTATGCACAGGGATCACAATCTGGATGGCTGCATATGCAATTAGGAGGTGATTTCGATAGAGTGGCATAA 870 0.454 LQVFIHNSNYYIIPKHLNEKQEIVRIEIIVIIITMEGPVINESTFSSANPSSYSLSEIWPATATTFTPIHNHKRKESSPSSSTTTATANHLNDSYGNKHRKLEGSFQEENRAGDSKAEVGASLVAGNKLARQGGGGGGGGGAAKPSCEQPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNMNSVVECFPSKDVQVGNQPFDIAGMIFGSQATRGYAQGSQSGWLHMQLGGDFDRVA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2411 289 MobiDBLite consensus disorder prediction 128 150 - -
Amo01g2411 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 233 IPR036638 GO:0046983
Amo01g2411 289 MobiDBLite consensus disorder prediction 69 98 - -
Amo01g2411 289 CDD bHLH_AtBPE_like 154 236 - -
Amo01g2411 289 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 46 288 IPR024097 GO:0006355
Amo01g2411 289 MobiDBLite consensus disorder prediction 78 93 - -
Amo01g2411 289 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Amo01g2411 289 PANTHER BNAC05G07950D PROTEIN 46 288 - -
Amo01g2411 289 Gene3D - 161 239 IPR036638 GO:0046983
Amo01g2411 289 Coils Coil 211 231 - -
Amo01g2411 289 SMART finulus 170 220 IPR011598 GO:0046983
Amo01g2411 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2411 Amo-Chr1 80954207 80957953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2411 35 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 43.945 3.35e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g2411 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2411 - - gmx:100799646 290.812